Variant report

Variant	rs73100433
Chromosome Location	chr12:40877694-40877695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40872855-40879178	NONHSAT027728

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17128172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17521316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56770752	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778408	1.00[EUR][1000 genomes]
rs57721717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58104027	1.00[EUR][1000 genomes]
rs7134318	1.00[EUR][1000 genomes]
rs7135212	1.00[EUR][1000 genomes]
rs73100424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73106627	1.00[EUR][1000 genomes]
rs73106651	1.00[EUR][1000 genomes]
rs73110078	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73110089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73112010	1.00[EUR][1000 genomes]
rs73112021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73112024	1.00[EUR][1000 genomes]
rs73116213	1.00[EUR][1000 genomes]
rs73117999	1.00[EUR][1000 genomes]
rs73119906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9668092	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1848303	chr12:40867011-40887238	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1850439	chr12:40867211-40887867	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv20428	chr12:40867874-40884927	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3390786	chr12:40871685-40877783	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3500652	chr12:40872785-40877883	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	esv1827225	chr12:40873026-40894172	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1833623	chr12:40873026-40894172	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv821471	chr12:40873057-40885132	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv16680	chr12:40873057-40885157	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv558610	chr12:40874088-40882121	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
12	nsv558615	chr12:40874339-40878452	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
13	esv2537704	chr12:40874370-40878297	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv558624	chr12:40874860-40879854	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
15	nsv558625	chr12:40874860-40880060	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	nsv558626	chr12:40874860-40880558	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	esv1809170	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
18	esv1826427	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
19	nsv558627	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	esv1820410	chr12:40874860-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv558628	chr12:40874860-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1834493	chr12:40874860-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv558633	chr12:40874912-40878452	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
24	nsv558634	chr12:40874912-40880060	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	esv1807063	chr12:40874912-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv558635	chr12:40874912-40884881	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv3418616	chr12:40874985-40880183	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
28	nsv558645	chr12:40875014-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv558658	chr12:40875252-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	nsv558660	chr12:40875303-40880060	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv558661	chr12:40875303-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	nsv558662	chr12:40875303-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv558663	chr12:40875303-40884881	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv558667	chr12:40875351-40879387	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
35	nsv558668	chr12:40875351-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
36	nsv558669	chr12:40875351-40884744	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv558678	chr12:40875525-40880558	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	nsv558685	chr12:40875695-40879387	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
39	nsv558686	chr12:40875963-40879854	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
40	esv3406823	chr12:40876285-40880883	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
41	nsv558687	chr12:40876644-40881245	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
42	nsv558688	chr12:40876644-40881673	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
43	nsv558689	chr12:40876644-40882121	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
44	nsv558690	chr12:40876644-40883745	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
45	nsv558691	chr12:40876644-40884403	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	esv9458	chr12:40876798-40877884	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
47	esv3401387	chr12:40876811-40877867	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
48	esv3451743	chr12:40876835-40877842	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
49	nsv558692	chr12:40877007-40882121	ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
50	nsv558693	chr12:40877007-40884403	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40877600-40878000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr12:40877600-40878800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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