Variant report
| Variant | rs73106651 |
|---|---|
| Chromosome Location | chr12:40928539-40928540 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CNTN1-1 | chr12:40928513-40928545 | XLOC_009713 |
| 2 | lnc-CNTN1-1 | chr12:40928513-40928586 | XLOC_009713 |
| 3 | lnc-CNTN1-1 | chr12:40928513-40928605 | NONHSAT027733 |
| 4 | lnc-CNTN1-1 | chr12:40928513-40928545 | NONHSAT027736 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11177109 | 0.87[AFR][1000 genomes] |
| rs17128172 | 1.00[EUR][1000 genomes] |
| rs17128301 | 1.00[EUR][1000 genomes] |
| rs17128396 | 1.00[EUR][1000 genomes] |
| rs17521316 | 1.00[EUR][1000 genomes] |
| rs56770752 | 1.00[EUR][1000 genomes] |
| rs56778408 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57721717 | 1.00[EUR][1000 genomes] |
| rs58104027 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7134318 | 1.00[EUR][1000 genomes] |
| rs7135212 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73100424 | 1.00[EUR][1000 genomes] |
| rs73100433 | 1.00[EUR][1000 genomes] |
| rs73106627 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73110078 | 1.00[EUR][1000 genomes] |
| rs73110086 | 1.00[EUR][1000 genomes] |
| rs73110089 | 1.00[EUR][1000 genomes] |
| rs73112010 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73112021 | 1.00[EUR][1000 genomes] |
| rs73112024 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73116213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73117999 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73119906 | 1.00[EUR][1000 genomes] |
| rs73119915 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9668092 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv8970 | chr12:40904094-40951213 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv3388339 | chr12:40917344-40931738 | Enhancers Weak transcription | TF binding regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40928400-40929200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
