Variant report
| Variant | rs56770752 |
|---|---|
| Chromosome Location | chr12:40896745-40896746 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17128172 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17128301 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17128396 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17521316 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56778408 | 1.00[EUR][1000 genomes] |
| rs57721717 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58104027 | 1.00[EUR][1000 genomes] |
| rs7134318 | 1.00[EUR][1000 genomes] |
| rs7135212 | 1.00[EUR][1000 genomes] |
| rs73100424 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73100433 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73106627 | 1.00[EUR][1000 genomes] |
| rs73106651 | 1.00[EUR][1000 genomes] |
| rs73110078 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73110086 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73110087 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73110089 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73112010 | 1.00[EUR][1000 genomes] |
| rs73112021 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73112024 | 1.00[EUR][1000 genomes] |
| rs73116213 | 1.00[EUR][1000 genomes] |
| rs73117999 | 1.00[EUR][1000 genomes] |
| rs73119906 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9668092 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40894800-40908600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
