Variant report

Variant	esv3407233
Chromosome Location	chr10:26859446-26862044
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABI1-9	chr10:26859887-26860230	NONHSAT011829

Extended variants
information (count: 191 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:191 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555190761	chr10:26859459-26859460	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs571759821	chr10:26859486-26859487	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs75798464	chr10:26859541-26859542	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs541848601	chr10:26859570-26859571	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs11377059	chr10:26859571-26859572	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs78343448	chr10:26859622-26859623	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs75472661	chr10:26859660-26859661	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs75045081	chr10:26859672-26859673	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs78958724	chr10:26859676-26859677	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs78249393	chr10:26859677-26859678	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs560303668	chr10:26859687-26859688	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs532714301	chr10:26859692-26859693	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs201508770	chr10:26859693-26859694	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs78366672	chr10:26859709-26859710	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs79784025	chr10:26859720-26859721	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75588701	chr10:26859733-26859734	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs75678404	chr10:26859737-26859738	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs531624018	chr10:26859774-26859775	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs80297694	chr10:26859782-26859783	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs548536811	chr10:26859818-26859819	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs201976862	chr10:26859833-26859834	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs368089227	chr10:26859840-26859841	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs79939038	chr10:26859845-26859846	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs527747580	chr10:26859848-26859849	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs202233019	chr10:26859880-26859881	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs373915733	chr10:26859881-26859882	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs78832590	chr10:26859891-26859892	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs374005688	chr10:26859895-26859896	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs185253037	chr10:26859918-26859919	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs151299761	chr10:26859923-26859924	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs77074940	chr10:26859951-26859952	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs4749163	chr10:26859953-26859954	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs80122452	chr10:26859954-26859955	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs76338492	chr10:26859966-26859967	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs77229951	chr10:26859967-26859968	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs80313237	chr10:26859973-26859974	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs79453150	chr10:26859981-26859982	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs578179146	chr10:26859985-26859986	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs375135346	chr10:26859986-26859987	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs74624409	chr10:26859987-26859988	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs569901083	chr10:26859990-26859991	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs74527015	chr10:26860001-26860002	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs75852347	chr10:26860005-26860006	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs535105555	chr10:26860013-26860014	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs75068608	chr10:26860023-26860024	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs77870188	chr10:26860029-26860030	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs77925607	chr10:26860035-26860036	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs75545929	chr10:26860042-26860043	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs75427941	chr10:26860043-26860044	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs78966154	chr10:26860044-26860045	Strong transcription Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
7	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:26846600-26859600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
15	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:26854000-26860800	Strong transcription	Thymus	Thymus
17	chr10:26854600-26860200	Strong transcription	Primary T cells from cord blood	blood
18	chr10:26855000-26859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:26855400-26860000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:26856400-26864000	Weak transcription	Pancreas	Pancrea
21	chr10:26856600-26859600	Weak transcription	Lung	lung
22	chr10:26856600-26860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:26856800-26859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:26857000-26860400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:26857600-26860600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
27	chr10:26857800-26859800	Weak transcription	Liver	Liver
28	chr10:26857800-26860000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:26858200-26859600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:26858400-26859600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:26858400-26861200	ZNF genes & repeats	Dnd41	blood
32	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:26859000-26860600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:26859000-26861000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:26859000-26862200	Weak transcription	GM12878-XiMat	blood
36	chr10:26859400-26860800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:26859400-26861000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:26859600-26860200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:26859600-26861000	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr10:26859600-26861000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr10:26859600-26861200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:26859800-26861000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:26859800-26861000	Enhancers	Liver	Liver
44	chr10:26860000-26860800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:26860000-26861000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr10:26860000-26861200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:26860200-26860800	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr10:26860200-26861000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:26860400-26860800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:26860600-26860800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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