Variant report

Variant	rs77870188
Chromosome Location	chr10:26860029-26860030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABI1-9	chr10:26859887-26860230	NONHSAT011829

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv971873	chr10:26850516-26870913	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3332234	chr10:26853285-26881775	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv466837	chr10:26858860-26866420	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv550230	chr10:26858860-26866420	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	esv3407233	chr10:26859446-26862044	Enhancers Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
12	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:26854000-26860800	Strong transcription	Thymus	Thymus
14	chr10:26854600-26860200	Strong transcription	Primary T cells from cord blood	blood
15	chr10:26856400-26864000	Weak transcription	Pancreas	Pancrea
16	chr10:26856600-26860200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:26857000-26860400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:26857600-26860600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
20	chr10:26858400-26861200	ZNF genes & repeats	Dnd41	blood
21	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:26859000-26860600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:26859000-26861000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:26859000-26862200	Weak transcription	GM12878-XiMat	blood
25	chr10:26859400-26860800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr10:26859400-26861000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:26859600-26860200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:26859600-26861000	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr10:26859600-26861000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr10:26859600-26861200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:26859800-26861000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:26859800-26861000	Enhancers	Liver	Liver
33	chr10:26860000-26860800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:26860000-26861000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
35	chr10:26860000-26861200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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