Variant report

Variant	esv3410151
Chromosome Location	chr10:6129771-6132319
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:736)
CpG islands
(count:610)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:736 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:6130663-6130989	K562	blood:	n/a	n/a
2	ARID3A	chr10:6131680-6131915	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:6130579-6131250	HepG2	liver:	n/a	n/a
4	ATF2	chr10:6130441-6130977	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr10:6130630-6130947	GM12878	blood:	n/a	n/a
6	ATF2	chr10:6130507-6130998	GM12878	blood:	n/a	n/a
7	ATF2	chr10:6130663-6130964	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr10:6130685-6131107	K562	blood:	n/a	chr10:6131013-6131022
9	ATF3	chr10:6130513-6131099	A549	lung:	n/a	chr10:6131013-6131022
10	ATF3	chr10:6130573-6131136	GM12878	blood:	n/a	chr10:6131013-6131022
11	ATF3	chr10:6130637-6131112	H1-hESC	embryonic stem cell:	n/a	chr10:6131013-6131022
12	ATF3	chr10:6130515-6131140	A549	lung:	n/a	chr10:6131013-6131022
13	ATF3	chr10:6130556-6131118	HepG2	liver:	n/a	chr10:6131013-6131022
14	ATF3	chr10:6130673-6131086	GM12878	blood:	n/a	chr10:6131013-6131022
15	ATF3	chr10:6130646-6131120	HepG2	liver:	n/a	chr10:6131013-6131022
16	ATF3	chr10:6130552-6130949	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF3	chr10:6130608-6131111	K562	blood:	n/a	chr10:6131013-6131022
18	BACH1	chr10:6130572-6130963	H1-hESC	embryonic stem cell:	n/a	n/a
19	BCL3	chr10:6130459-6130976	A549	lung:	n/a	chr10:6130719-6130728
20	BCL3	chr10:6130505-6131065	A549	lung:	n/a	chr10:6131015-6131028 chr10:6130719-6130728
21	BCLAF1	chr10:6130507-6131438	GM12878	blood:	n/a	chr10:6131015-6131028 chr10:6131315-6131328 chr10:6131361-6131374 chr10:6131067-6131080 chr10:6130719-6130728 chr10:6131364-6131373 chr10:6131265-6131274 chr10:6131358-6131371
22	BCLAF1	chr10:6130527-6131216	K562	blood:	n/a	chr10:6131015-6131028 chr10:6131067-6131080 chr10:6130719-6130728
23	BCLAF1	chr10:6130445-6131098	GM12878	blood:	n/a	chr10:6131015-6131028 chr10:6131067-6131080 chr10:6130719-6130728
24	BHLHE40	chr10:6130613-6131069	GM12878	blood:	n/a	chr10:6130993-6131009
25	BHLHE40	chr10:6131363-6131415	GM12878	blood:	n/a	n/a
26	BHLHE40	chr10:6130586-6131103	HepG2	liver:	n/a	chr10:6130993-6131009
27	BHLHE40	chr10:6130644-6131080	K562	blood:	n/a	chr10:6130993-6131009
28	BHLHE40	chr10:6131492-6131791	K562	blood:	n/a	n/a
29	BRCA1	chr10:6130657-6130953	Hela-S3	cervix:	n/a	n/a
30	BRCA1	chr10:6130660-6130961	HepG2	liver:	n/a	n/a
31	BRCA1	chr10:6130625-6131003	H1-hESC	embryonic stem cell:	n/a	n/a
32	CBX3	chr10:6130592-6130985	K562	blood:	n/a	n/a
33	CBX3	chr10:6130548-6131019	K562	blood:	n/a	n/a
34	CBX3	chr10:6130490-6131078	HCT-116	colon:	n/a	n/a
35	CCNT2	chr10:6130696-6131765	K562	blood:	n/a	n/a
36	CEBPB	chr10:6130523-6131057	A549	lung:	n/a	n/a
37	CEBPB	chr10:6130659-6130994	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPB	chr10:6131477-6131664	HepG2	liver:	n/a	n/a
39	CEBPB	chr10:6130629-6130996	K562	blood:	n/a	n/a
40	CEBPB	chr10:6130651-6130970	HepG2	liver:	n/a	n/a
41	CEBPB	chr10:6130633-6131044	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr10:6130553-6131022	GM12878	blood:	n/a	n/a
43	CEBPB	chr10:6130764-6130937	HepG2	liver:	n/a	n/a
44	CEBPB	chr10:6130605-6131000	K562	blood:	n/a	n/a
45	CEBPD	chr10:6130862-6131205	HepG2	liver:	n/a	n/a
46	CHD1	chr10:6130488-6131352	GM12878	blood:	n/a	n/a
47	CHD1	chr10:6130545-6132481	IMR90	lung:	n/a	n/a
48	CHD1	chr10:6130479-6131599	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD2	chr10:6131580-6131874	HepG2	liver:	n/a	n/a
50	CHD2	chr10:6130640-6131325	GM12878	blood:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:6130787-6130837	SK-N-SH	brain:	n/a
2	chr10:6130578-6130628	U87	brain:	n/a
3	chr10:6130861-6130911	HCPEpiC	choroid plexus:	n/a
4	chr10:6130479-6130529	MCF10A-Er-Src	breast:	n/a
5	chr10:6130861-6130911	HL-60	blood:	n/a
6	chr10:6131472-6131522	NT2-D1	testis:	n/a
7	chr10:6130479-6130529	PFSK-1	brain:	n/a
8	chr10:6130578-6130628	NT2-D1	testis:	n/a
9	chr10:6131228-6131278	HUVEC	blood vessel:	n/a
10	chr10:6131472-6131522	AG09309	skin:	n/a
11	chr10:6130578-6130628	HRCEpiC	kidney:	n/a
12	chr10:6130578-6130628	K562	blood:	n/a
13	chr10:6130867-6130917	BJ	skin:	n/a
14	chr10:6130578-6130628	GM19239	blood:	n/a
15	chr10:6131472-6131522	SAEC	small airway:	n/a
16	chr10:6131472-6131522	ovcar-3	ovarian:	n/a
17	chr10:6130864-6130914	NH-A	brain:	n/a
18	chr10:6130793-6130843	GM12892	blood:	n/a
19	chr10:6130864-6130914	SKMC	muscle:	n/a
20	chr10:6131228-6131278	K562	blood:	n/a
21	chr10:6130867-6130917	GM12891	blood:	n/a
22	chr10:6131228-6131278	NHBE	bronchial:	n/a
23	chr10:6130861-6130911	Hela-S3	cervix:	n/a
24	chr10:6130864-6130914	GM06990	blood:	n/a
25	chr10:6130580-6130630	HIPEpiC	eye:	n/a
26	chr10:6130793-6130843	HUVEC	blood vessel:	n/a
27	chr10:6130867-6130917	HAEpiC	amniotic membrane:	n/a
28	chr10:6130864-6130914	HMEC	breast:	n/a
29	chr10:6130793-6130843	CMK	blood:	n/a
30	chr10:6130861-6130911	GM12878	blood:	n/a
31	chr10:6130867-6130917	HCM	heart:	n/a
32	chr10:6130793-6130843	HRE	kidney:	n/a
33	chr10:6130861-6130911	HUVEC	blood vessel:	n/a
34	chr10:6130793-6130843	NH-A	brain:	n/a
35	chr10:6130867-6130917	Hela-S3	cervix:	n/a
36	chr10:6130867-6130917	SK-N-SH_RA	brain:	n/a
37	chr10:6131472-6131522	AG09319	gingival:	n/a
38	chr10:6130479-6130529	LNCaP	prostate:	n/a
39	chr10:6131228-6131278	H1-hESC	embryonic stem cell:	embryo
40	chr10:6130867-6130917	HepG2	liver:	n/a
41	chr10:6130580-6130630	HRCEpiC	kidney:	n/a
42	chr10:6130861-6130911	SK-N-MC	brain:	n/a
43	chr10:6130867-6130917	Hepatocyte	liver:	n/a
44	chr10:6130861-6130911	SK-N-SH_RA	brain:	n/a
45	chr10:6130793-6130843	PANC-1	pancreas:	n/a
46	chr10:6130793-6130843	HRCEpiC	kidney:	n/a
47	chr10:6130787-6130837	LNCaP	prostate:	n/a
48	chr10:6130787-6130837	Caco-2	colon:	n/a
49	chr10:6130479-6130529	H1-hESC	embryonic stem cell:	embryo
50	chr10:6131472-6131522	SKMC	muscle:	n/a

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6074070..6077031-chr10:6131328..6132999,2	K562	blood:
2	chr10:6129825..6133257-chr10:6241985..6247329,10	MCF-7	breast:
3	chr10:6130483..6131187-chr17:58513324..58513942,2	MCF-7	breast:
4	chr10:6130184..6130942-chr10:6245055..6246031,2	MCF-7	breast:
5	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
6	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
7	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:
8	chr10:6018064..6019912-chr10:6129955..6132156,2	K562	blood:
9	chr10:6130957..6132763-chr10:6153390..6155892,2	MCF-7	breast:
10	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
11	chr10:6131173..6133943-chr10:6186718..6189110,2	MCF-7	breast:
12	chr10:6129764..6131854-chr10:6149478..6152087,2	MCF-7	breast:
13	chr10:5989843..5990785-chr10:6130083..6130917,2	K562	blood:
14	chr10:6131719..6134216-chr10:6253022..6254903,2	MCF-7	breast:
15	chr10:6128980..6130903-chr10:6206068..6209123,3	K562	blood:
16	chr10:6130983..6133585-chr10:6620139..6622430,2	K562	blood:
17	chr10:6018278..6019533-chr10:6130531..6131243,3	MCF-7	breast:
18	chr10:6130589..6132639-chr10:6184439..6189476,5	K562	blood:
19	chr10:6114985..6117778-chr10:6128679..6130430,2	MCF-7	breast:
20	chr10:6128377..6132115-chr10:6241834..6247197,6	MCF-7	breast:
21	chr10:5986795..5989162-chr10:6128663..6130950,2	K562	blood:
22	chr10:6130591..6133050-chr10:6185385..6187497,2	MCF-7	breast:
23	chr10:6116771..6117539-chr10:6130301..6130858,2	MCF-7	breast:
24	chr10:6083497..6085137-chr10:6128481..6130673,2	MCF-7	breast:
25	chr10:6129204..6131748-chr10:6244207..6246414,2	K562	blood:
26	chr10:6130329..6130942-chr17:58224606..58225403,2	MCF-7	breast:
27	chr10:6019647..6020148-chr10:6130484..6131213,2	MCF-7	breast:
28	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:
29	chr10:6131418..6133941-chr10:6140772..6145305,6	K562	blood:
30	chr10:6121462..6124119-chr10:6127226..6129947,2	MCF-7	breast:
31	chr10:6101613..6103309-chr10:6128330..6130665,2	MCF-7	breast:

No data

Variant related genes	Relation type
RBM17	TF binding region
RBM17	CpG island
ENSG00000237943	chromatin interactions
ENSG00000213994	chromatin interactions
ENSG00000065675	chromatin interactions
ENSG00000170525	chromatin interactions
ENSG00000134453	chromatin interactions
ENSG00000232807	chromatin interactions
ENSG00000134470	chromatin interactions
ENSG00000213228	chromatin interactions

Extended variants
information (count: 107 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565529886	chr10:6129779-6129780	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs536301149	chr10:6129780-6129781	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs554608416	chr10:6129806-6129807	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs150174050	chr10:6129838-6129839	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs7898890	chr10:6129874-6129875	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs116295771	chr10:6129913-6129914	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs12247271	chr10:6129940-6129941	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs7899110	chr10:6130005-6130006	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs113158011	chr10:6130073-6130074	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs553476196	chr10:6130074-6130075	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs61316905	chr10:6130076-6130077	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs6602437	chr10:6130077-6130078	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs59887145	chr10:6130121-6130122	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs34975410	chr10:6130122-6130123	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs367935126	chr10:6130123-6130124	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs397748189	chr10:6130129-6130130	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs76348949	chr10:6130130-6130131	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs113784825	chr10:6130139-6130140	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs146584346	chr10:6130147-6130148	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs139675569	chr10:6130149-6130150	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs57254415	chr10:6130161-6130162	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs563360374	chr10:6130189-6130190	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs373695386	chr10:6130194-6130195	Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs531478216	chr10:6130211-6130212	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs7911362	chr10:6130226-6130227	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs564916601	chr10:6130265-6130266	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs201468276	chr10:6130429-6130430	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs138580199	chr10:6130443-6130444	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs547174199	chr10:6130465-6130466	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs372258109	chr10:6130505-6130506	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
31	rs149288534	chr10:6130536-6130537	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs529829618	chr10:6130557-6130558	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs548179242	chr10:6130580-6130581	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs183611951	chr10:6130594-6130595	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
35	rs375231775	chr10:6130595-6130596	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
36	rs369267862	chr10:6130598-6130599	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
37	rs559240101	chr10:6130627-6130628	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
38	rs371060091	chr10:6130644-6130645	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
39	rs186941389	chr10:6130677-6130678	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
40	rs372392911	chr10:6130704-6130705	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
41	rs535171871	chr10:6130706-6130707	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
42	rs553297679	chr10:6130740-6130741	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
43	rs191785335	chr10:6130820-6130821	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
44	rs560622876	chr10:6130835-6130836	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
45	rs529390573	chr10:6130913-6130914	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
46	rs556917481	chr10:6130979-6130980	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
47	rs575271689	chr10:6130985-6130986	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
48	rs543343599	chr10:6130989-6130990	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
49	rs3750668	chr10:6131007-6131008	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs3750669	chr10:6131029-6131030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Ovarian cancer	22355333	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:467 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:6126000-6130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:6126000-6131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:6126200-6131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6128200-6131000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:6128400-6130400	Weak transcription	Esophagus	oesophagus
7	chr10:6128400-6130400	Weak transcription	HSMM	muscle
8	chr10:6128400-6130400	Weak transcription	NH-A	brain
9	chr10:6128400-6130600	Weak transcription	Psoas Muscle	Psoas
10	chr10:6128600-6130400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:6128600-6130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:6128600-6130400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:6128600-6130400	Weak transcription	Aorta	Aorta
14	chr10:6128600-6130400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:6128600-6130600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:6128600-6131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:6128800-6130400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:6128800-6130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:6128800-6130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:6128800-6130400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:6128800-6130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:6128800-6130400	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:6128800-6130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:6128800-6130400	Weak transcription	Fetal Kidney	kidney
25	chr10:6128800-6130400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:6128800-6130400	Weak transcription	Fetal Stomach	stomach
27	chr10:6128800-6130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:6128800-6130400	Weak transcription	Stomach Mucosa	stomach
29	chr10:6128800-6130400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:6128800-6130400	Weak transcription	HSMMtube	muscle
31	chr10:6128800-6130400	Weak transcription	NHEK	skin
32	chr10:6128800-6130400	Weak transcription	NHLF	lung
33	chr10:6128800-6130400	Weak transcription	Osteobl	bone
34	chr10:6128800-6130600	Weak transcription	Hela-S3	cervix
35	chr10:6128800-6131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:6128800-6131000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:6129000-6130200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:6129000-6130200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:6129000-6130200	Weak transcription	Brain Substantia Nigra	brain
40	chr10:6129000-6130400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:6129000-6130400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:6129000-6130400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:6129000-6130400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:6129000-6130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:6129000-6130400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:6129000-6130400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:6129000-6130400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:6129000-6130400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:6129000-6130400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:6129000-6130400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links