Variant report

Variant	rs59887145
Chromosome Location	chr10:6130121-6130122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:6129833-6132689	A549	lung:	n/a	chr10:6131172-6131185 chr10:6132605-6132618 chr10:6131800-6131813 chr10:6131176-6131185 chr10:6131066-6131079
2	MAZ	chr10:6130080-6132305	IMR90	lung:	n/a	n/a
3	CTCF	chr10:6130120-6130270	HPF	lung:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6101613..6103309-chr10:6128330..6130665,2	MCF-7	breast:
2	chr10:6128377..6132115-chr10:6241834..6247197,6	MCF-7	breast:
3	chr10:6129764..6131854-chr10:6149478..6152087,2	MCF-7	breast:
4	chr10:6018064..6019912-chr10:6129955..6132156,2	K562	blood:
5	chr10:6114985..6117778-chr10:6128679..6130430,2	MCF-7	breast:
6	chr10:5989843..5990785-chr10:6130083..6130917,2	K562	blood:
7	chr10:6129825..6133257-chr10:6241985..6247329,10	MCF-7	breast:
8	chr10:5986795..5989162-chr10:6128663..6130950,2	K562	blood:
9	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
10	chr10:6128980..6130903-chr10:6206068..6209123,3	K562	blood:
11	chr10:6083497..6085137-chr10:6128481..6130673,2	MCF-7	breast:
12	chr10:6129204..6131748-chr10:6244207..6246414,2	K562	blood:
13	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:

No data

Variant related genes	Relation type
RBM17	TF binding region
ENSG00000213994	Chromatin interaction
ENSG00000232807	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3410151	chr10:6129771-6132319	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:6126000-6130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:6126000-6131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:6126200-6131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6128200-6131000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:6128400-6130400	Weak transcription	Esophagus	oesophagus
7	chr10:6128400-6130400	Weak transcription	HSMM	muscle
8	chr10:6128400-6130400	Weak transcription	NH-A	brain
9	chr10:6128400-6130600	Weak transcription	Psoas Muscle	Psoas
10	chr10:6128600-6130400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:6128600-6130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:6128600-6130400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:6128600-6130400	Weak transcription	Aorta	Aorta
14	chr10:6128600-6130400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:6128600-6130600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:6128600-6131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:6128800-6130400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:6128800-6130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:6128800-6130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:6128800-6130400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:6128800-6130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:6128800-6130400	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:6128800-6130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:6128800-6130400	Weak transcription	Fetal Kidney	kidney
25	chr10:6128800-6130400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:6128800-6130400	Weak transcription	Fetal Stomach	stomach
27	chr10:6128800-6130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:6128800-6130400	Weak transcription	Stomach Mucosa	stomach
29	chr10:6128800-6130400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:6128800-6130400	Weak transcription	HSMMtube	muscle
31	chr10:6128800-6130400	Weak transcription	NHEK	skin
32	chr10:6128800-6130400	Weak transcription	NHLF	lung
33	chr10:6128800-6130400	Weak transcription	Osteobl	bone
34	chr10:6128800-6130600	Weak transcription	Hela-S3	cervix
35	chr10:6128800-6131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:6128800-6131000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:6129000-6130200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:6129000-6130200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:6129000-6130200	Weak transcription	Brain Substantia Nigra	brain
40	chr10:6129000-6130400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:6129000-6130400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:6129000-6130400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:6129000-6130400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:6129000-6130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:6129000-6130400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:6129000-6130400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:6129000-6130400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:6129000-6130400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:6129000-6130400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:6129000-6130400	Enhancers	Primary T helper cells PMA-I stimulated	--

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