Variant report

Variant	esv3410897
Chromosome Location	chr9:101569181-101571179
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:279)
CpG islands
(count:305)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:279 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr9:101570671-101570970	K562	blood:	n/a	n/a
2	BHLHE40	chr9:101569272-101569326	GM12878	blood:	n/a	n/a
3	BHLHE40	chr9:101570245-101570410	K562	blood:	n/a	n/a
4	BHLHE40	chr9:101569104-101569848	K562	blood:	n/a	n/a
5	CBX3	chr9:101569209-101569863	K562	blood:	n/a	n/a
6	CCNT2	chr9:101569411-101570498	K562	blood:	n/a	n/a
7	CHD2	chr9:101569473-101569733	H1-hESC	embryonic stem cell:	n/a	n/a
8	CHD2	chr9:101570036-101570042	H1-hESC	embryonic stem cell:	n/a	n/a
9	CREB1	chr9:101569802-101570109	A549	lung:	n/a	n/a
10	CTCF	chr9:101569968-101570048	GM19238	blood:	n/a	n/a
11	CTCF	chr9:101569991-101570075	K562	blood:	n/a	n/a
12	CTCF	chr9:101569958-101570070	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr9:101569920-101570070	SK-N-SH_RA	brain:	n/a	n/a
14	CTCF	chr9:101570961-101571093	MCF-7	breast:	n/a	n/a
15	CTCF	chr9:101569984-101570016	Lung_OC	lung:	n/a	n/a
16	CTCF	chr9:101568530-101569186	HCT-116	colon:	n/a	chr9:101568822-101568843 chr9:101568820-101568838
17	CTCF	chr9:101570960-101571110	WERI-Rb-1	eye:	n/a	n/a
18	CTCF	chr9:101569940-101570090	HUVEC	blood vessel:	n/a	n/a
19	CTCF	chr9:101569961-101570094	Gliobla	brain:	n/a	n/a
20	CTCF	chr9:101569040-101569190	HBMEC	blood vessel:	n/a	n/a
21	CTCF	chr9:101569900-101570050	HEK293	kidney:	n/a	n/a
22	CTCF	chr9:101569902-101570091	GM12878	blood:	n/a	n/a
23	CTCF	chr9:101570036-101570045	GM19239	blood:	n/a	n/a
24	CTCF	chr9:101571005-101571073	MCF-7	breast:	n/a	n/a
25	CTCF	chr9:101569900-101570050	GM12874	blood:	n/a	n/a
26	CTCF	chr9:101569982-101570066	LNCaP	prostate:	n/a	n/a
27	CTCF	chr9:101569940-101570090	GM12873	blood:	n/a	n/a
28	CTCF	chr9:101569920-101570070	SAEC	small airway:	n/a	n/a
29	CTCF	chr9:101569898-101570100	A549	lung:	n/a	n/a
30	CTCF	chr9:101569921-101570111	MCF-7	breast:	n/a	n/a
31	CTCF	chr9:101569899-101570043	SK-N-SH_RA	brain:	n/a	n/a
32	CTCF	chr9:101569900-101570050	AG09319	gingival:	n/a	n/a
33	CTCF	chr9:101569877-101570123	K562	blood:	n/a	n/a
34	CTCF	chr9:101569973-101570060	K562	blood:	n/a	n/a
35	CTCF	chr9:101569080-101569230	GM12864	blood:	n/a	n/a
36	CTCF	chr9:101570340-101570490	GM12874	blood:	n/a	n/a
37	CTCF	chr9:101569953-101570022	GM10266	blood:	n/a	n/a
38	CTCF	chr9:101569240-101569390	AG04450	lung:	n/a	n/a
39	CTCF	chr9:101569900-101570050	AG04449	skin:	n/a	n/a
40	CTCF	chr9:101569935-101570095	NHEK	skin:	n/a	n/a
41	CTCF	chr9:101569940-101570090	WERI-Rb-1	eye:	n/a	n/a
42	CTCF	chr9:101569980-101570130	GM12872	blood:	n/a	n/a
43	CTCF	chr9:101569987-101570054	GM19240	blood:	n/a	n/a
44	CTCF	chr9:101569700-101569850	HBMEC	blood vessel:	n/a	n/a
45	CTCF	chr9:101569907-101570079	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr9:101569921-101570111	Fibrobl	skin:	n/a	n/a
47	CTCF	chr9:101569860-101570010	HRPEpiC	eye:	n/a	n/a
48	CTCF	chr9:101568510-101570694	A549	lung:	n/a	chr9:101568822-101568843 chr9:101568820-101568838
49	CTCF	chr9:101570480-101570630	HRPEpiC	eye:	n/a	n/a
50	CTCF	chr9:101569918-101570066	GM10248	blood:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:101569334-101569384	PANC-1	pancreas:	n/a
2	chr9:101569990-101570040	HAEpiC	amniotic membrane:	n/a
3	chr9:101569843-101569893	LNCaP	prostate:	n/a
4	chr9:101569990-101570040	RPTEC	kidney:	n/a
5	chr9:101570703-101570753	PANC-1	pancreas:	n/a
6	chr9:101569843-101569893	H1-hESC	embryonic stem cell:	embryo
7	chr9:101569696-101569746	AG04450	lung:	fetal
8	chr9:101570703-101570753	HL-60	blood:	n/a
9	chr9:101569843-101569893	AG09319	gingival:	n/a
10	chr9:101569334-101569384	ovcar-3	ovarian:	n/a
11	chr9:101570703-101570753	GM12891	blood:	n/a
12	chr9:101570703-101570753	GM19239	blood:	n/a
13	chr9:101569843-101569893	PFSK-1	brain:	n/a
14	chr9:101569990-101570040	U87	brain:	n/a
15	chr9:101570703-101570753	HNPCEpiC	eye:	n/a
16	chr9:101570703-101570753	Jurkat	blood:	n/a
17	chr9:101569334-101569384	PFSK-1	brain:	n/a
18	chr9:101569696-101569746	H1-hESC	embryonic stem cell:	embryo
19	chr9:101569990-101570040	PANC-1	pancreas:	n/a
20	chr9:101569843-101569893	HCT-116	colon:	n/a
21	chr9:101569334-101569384	NHBE	bronchial:	n/a
22	chr9:101569990-101570040	AG10803	skin:	n/a
23	chr9:101569696-101569746	NHBE	bronchial:	n/a
24	chr9:101569843-101569893	HNPCEpiC	eye:	n/a
25	chr9:101569334-101569384	NHDF-neo	bronchial:	n/a
26	chr9:101569696-101569746	PFSK-1	brain:	n/a
27	chr9:101569696-101569746	HCM	heart:	n/a
28	chr9:101570703-101570753	HEK293	kidney:	embryo
29	chr9:101569334-101569384	HIPEpiC	eye:	n/a
30	chr9:101569334-101569384	HEEpiC	esophagus:	n/a
31	chr9:101569990-101570040	HRPEpiC	eye:	n/a
32	chr9:101569696-101569746	HCPEpiC	choroid plexus:	n/a
33	chr9:101569990-101570040	Caco-2	colon:	n/a
34	chr9:101569696-101569746	AG09319	gingival:	n/a
35	chr9:101569843-101569893	HRE	kidney:	n/a
36	chr9:101570703-101570753	AG09319	gingival:	n/a
37	chr9:101569696-101569746	LNCaP	prostate:	n/a
38	chr9:101569843-101569893	GM19239	blood:	n/a
39	chr9:101569696-101569746	AG09309	skin:	n/a
40	chr9:101569334-101569384	SAEC	small airway:	n/a
41	chr9:101569696-101569746	HEK293	kidney:	embryo
42	chr9:101570703-101570753	Hepatocyte	liver:	n/a
43	chr9:101569990-101570040	NHDF-neo	bronchial:	n/a
44	chr9:101569334-101569384	GM12891	blood:	n/a
45	chr9:101570703-101570753	NHDF-neo	bronchial:	n/a
46	chr9:101569696-101569746	SK-N-SH_RA	brain:	n/a
47	chr9:101569843-101569893	AG09309	skin:	n/a
48	chr9:101569843-101569893	NHBE	bronchial:	n/a
49	chr9:101569990-101570040	AG09309	skin:	n/a
50	chr9:101569843-101569893	Hela-S3	cervix:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101570303..101574512-chr9:101580563..101586059,9	K562	blood:
2	chr9:101552233..101554875-chr9:101569362..101571456,2	K562	blood:
3	chr9:101550194..101555244-chr9:101566657..101571786,8	MCF-7	breast:
4	chr9:101569010..101571000-chr9:101705834..101707895,2	MCF-7	breast:
5	chr9:101571158..101574064-chr9:101576391..101578581,2	K562	blood:
6	chr9:101555483..101562112-chr9:101568669..101573087,9	K562	blood:
7	chr9:101570786..101573911-chr9:101592967..101596373,4	K562	blood:
8	chr9:101570706..101573424-chr9:101594873..101597153,4	K562	blood:
9	chr20:62284408..62284944-chr9:101569753..101570305,2	HCT-116	colon:
10	chr9:101551293..101553847-chr9:101568036..101571328,4	K562	blood:
11	chr9:101567600..101569220-chr9:101571487..101573916,3	MCF-7	breast:
12	chr9:101570653..101573493-chr9:101866236..101867897,2	K562	blood:
13	chr9:101550225..101553756-chr9:101569289..101571539,3	MCF-7	breast:
14	chr9:101568879..101571340-chr9:101705382..101708339,2	K562	blood:
15	chr9:101557242..101560519-chr9:101566443..101572716,8	MCF-7	breast:
16	chr9:101556573..101560424-chr9:101566029..101574080,12	MCF-7	breast:
17	chr9:101568546..101571235-chr9:101609367..101611059,3	MCF-7	breast:
18	chr9:101567740..101569488-chr9:101580448..101582310,2	K562	blood:
19	chr9:101571089..101573557-chr9:101759747..101761480,2	MCF-7	breast:
20	chr9:101570471..101572096-chr9:101573818..101575342,2	K562	blood:

No data

Variant related genes	Relation type
GALNT12	TF binding region
GALNT12	CpG island
ENSG00000270412	chromatin interactions
ENSG00000119514	chromatin interactions
ENSG00000197457	chromatin interactions
ENSG00000106799	chromatin interactions
ENSG00000165138	chromatin interactions
ENSG00000204291	chromatin interactions

Extended variants
information (count: 63 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535211118	chr9:101569250-101569251	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs182951714	chr9:101569290-101569291	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs375444010	chr9:101569312-101569313	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs187297892	chr9:101569323-101569324	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs192139625	chr9:101569372-101569373	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs115039818	chr9:101569386-101569387	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs544797595	chr9:101569408-101569409	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs368077872	chr9:101569499-101569500	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs12348562	chr9:101569505-101569506	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs115181675	chr9:101569543-101569544	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs571943380	chr9:101569602-101569603	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs540816010	chr9:101569796-101569797	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs560896517	chr9:101569816-101569817	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs529949553	chr9:101569823-101569824	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs543661104	chr9:101569827-101569828	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs563549426	chr9:101569847-101569848	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs532510754	chr9:101569869-101569870	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs371968166	chr9:101569917-101569918	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs552420611	chr9:101569928-101569929	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs566165069	chr9:101569934-101569935	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs528740851	chr9:101569937-101569938	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs548801403	chr9:101569955-101569956	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs267606839	chr9:101569983-101569984	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs568625965	chr9:101570000-101570001	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs10987768	chr9:101570116-101570117	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs557604978	chr9:101570118-101570119	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs13301943	chr9:101570139-101570140	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs372282217	chr9:101570266-101570267	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs201926457	chr9:101570283-101570284	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs569578805	chr9:101570292-101570293	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs374994372	chr9:101570309-101570310	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs12000754	chr9:101570317-101570318	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs538612614	chr9:101570334-101570335	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs1137654	chr9:101570336-101570337	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs202137559	chr9:101570339-101570340	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs372560085	chr9:101570376-101570377	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs540680307	chr9:101570452-101570453	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs554353537	chr9:101570468-101570469	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs114132671	chr9:101570481-101570482	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs59974507	chr9:101570530-101570531	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs543376469	chr9:101570552-101570553	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs563579938	chr9:101570634-101570635	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs74844934	chr9:101570638-101570639	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs555566562	chr9:101570658-101570659	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs574230167	chr9:101570725-101570726	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs35304581	chr9:101570776-101570777	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
47	rs546212778	chr9:101570789-101570790	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs114710537	chr9:101570802-101570803	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
49	rs369074251	chr9:101570807-101570808	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs187676679	chr9:101570850-101570851	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
overgrowth syndrome	16570072	CNVD
Neurodevelopmental disorder	22521361	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Esophageal cancer	21851588	CNVD
Melanoma	17363583	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:494 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101559600-101569600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:101562600-101569400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:101566200-101569200	Weak transcription	Fetal Stomach	stomach
4	chr9:101567400-101569200	Weak transcription	Fetal Lung	lung
5	chr9:101567400-101569400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:101567400-101569400	Enhancers	Fetal Intestine Small	intestine
7	chr9:101567400-101569400	Enhancers	K562	blood
8	chr9:101567400-101569600	Enhancers	HMEC	breast
9	chr9:101567600-101569200	Enhancers	Colonic Mucosa	Colon
10	chr9:101567600-101569400	Enhancers	Duodenum Mucosa	Duodenum
11	chr9:101567600-101569400	Enhancers	Esophagus	oesophagus
12	chr9:101567600-101569400	Enhancers	Fetal Intestine Large	intestine
13	chr9:101567600-101569600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:101567600-101569600	Enhancers	Gastric	stomach
15	chr9:101567600-101569600	Enhancers	NHEK	skin
16	chr9:101567600-101570000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:101567800-101569400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:101567800-101569400	Weak transcription	Right Ventricle	heart
19	chr9:101567800-101569400	Enhancers	Stomach Mucosa	stomach
20	chr9:101567800-101569800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:101567800-101569800	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr9:101568000-101569200	Weak transcription	Spleen	Spleen
23	chr9:101568000-101569400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:101568200-101569800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:101568400-101569200	Enhancers	Fetal Brain Male	brain
26	chr9:101568400-101570600	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr9:101568600-101569200	Active TSS	Rectal Smooth Muscle	rectum
28	chr9:101568600-101569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:101568600-101569400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:101568800-101569200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:101568800-101569200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:101568800-101569800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr9:101569000-101569200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr9:101569000-101569200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
35	chr9:101569000-101569200	Enhancers	Adipose Nuclei	Adipose
36	chr9:101569000-101569200	Enhancers	Brain Anterior Caudate	brain
37	chr9:101569000-101569200	Flanking Active TSS	Fetal Brain Female	brain
38	chr9:101569000-101569200	Enhancers	Pancreas	Pancrea
39	chr9:101569000-101569400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
40	chr9:101569000-101569400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr9:101569000-101569400	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr9:101569000-101569400	Enhancers	Brain Cingulate Gyrus	brain
43	chr9:101569000-101569400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr9:101569000-101569400	Enhancers	Brain Substantia Nigra	brain
45	chr9:101569000-101569400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr9:101569000-101569600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:101569000-101569600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:101569000-101569600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:101569000-101569600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
50	chr9:101569000-101569600	Flanking Active TSS	Colon Smooth Muscle	Colon

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