Variant report

Variant	rs368077872
Chromosome Location	chr9:101569499-101569500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:101568510-101570694	A549	lung:	n/a	chr9:101568822-101568843 chr9:101568820-101568838
2	MYC	chr9:101569369-101570400	K562	blood:	n/a	n/a
3	MAZ	chr9:101569471-101570119	K562	blood:	n/a	n/a
4	MAX	chr9:101569322-101569578	H1-hESC	embryonic stem cell:	n/a	n/a
5	NR2F2	chr9:101569198-101569926	K562	blood:	n/a	n/a
6	JUND	chr9:101569407-101569815	T-47D	breast:	n/a	n/a
7	E2F6	chr9:101569085-101570359	K562	blood:	n/a	chr9:101569821-101569831
8	BHLHE40	chr9:101569104-101569848	K562	blood:	n/a	n/a
9	MAX	chr9:101569219-101569680	H1-hESC	embryonic stem cell:	n/a	n/a
10	E2F6	chr9:101569214-101569504	K562	blood:	n/a	n/a
11	CHD2	chr9:101569473-101569733	H1-hESC	embryonic stem cell:	n/a	n/a
12	GATA3	chr9:101569190-101570151	MCF-7	breast:	n/a	n/a
13	E2F6	chr9:101569170-101569685	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr9:101569240-101569573	K562	blood:	n/a	n/a
15	CCNT2	chr9:101569411-101570498	K562	blood:	n/a	n/a
16	FOXA1	chr9:101569461-101569755	T-47D	breast:	n/a	n/a
17	MAX	chr9:101569097-101570259	K562	blood:	n/a	n/a
18	POLR2A	chr9:101569445-101570368	Raji	blood:	n/a	n/a
19	SIN3AK20	chr9:101569301-101569986	MCF-7	breast:	n/a	n/a
20	MAX	chr9:101569102-101570463	K562	blood:	n/a	n/a
21	CBX3	chr9:101569209-101569863	K562	blood:	n/a	n/a
22	GATA2	chr9:101569368-101569834	SH-SY5Y	brain:	n/a	n/a
23	E2F6	chr9:101569298-101569566	K562	blood:	n/a	n/a
24	GATA3	chr9:101569416-101569818	T-47D	breast:	n/a	n/a
25	NR2F2	chr9:101569172-101570167	MCF-7	breast:	n/a	n/a
26	MAX	chr9:101569231-101570525	A549	lung:	n/a	n/a
27	GATA3	chr9:101569263-101570460	MCF-7	breast:	n/a	n/a
28	MAX	chr9:101569253-101570453	MCF-7	breast:	n/a	n/a
29	FOXA1	chr9:101569431-101569803	T-47D	breast:	n/a	n/a
30	GATA3	chr9:101569340-101569803	T-47D	breast:	n/a	n/a
31	MYC	chr9:101569455-101570376	K562	blood:	n/a	n/a
32	TEAD4	chr9:101568999-101570094	K562	blood:	n/a	n/a
33	MAX	chr9:101569268-101570466	H1-hESC	embryonic stem cell:	n/a	n/a
34	HMGN3	chr9:101569339-101570607	K562	blood:	n/a	n/a
35	GATA3	chr9:101569285-101569795	MCF-7	breast:	n/a	n/a
36	E2F6	chr9:101569182-101569631	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101568546..101571235-chr9:101609367..101611059,3	MCF-7	breast:
2	chr9:101568879..101571340-chr9:101705382..101708339,2	K562	blood:
3	chr9:101556573..101560424-chr9:101566029..101574080,12	MCF-7	breast:
4	chr9:101569010..101571000-chr9:101705834..101707895,2	MCF-7	breast:
5	chr9:101550194..101555244-chr9:101566657..101571786,8	MCF-7	breast:
6	chr9:101551293..101553847-chr9:101568036..101571328,4	K562	blood:
7	chr9:101555483..101562112-chr9:101568669..101573087,9	K562	blood:
8	chr9:101557242..101560519-chr9:101566443..101572716,8	MCF-7	breast:
9	chr9:101552233..101554875-chr9:101569362..101571456,2	K562	blood:
10	chr9:101550225..101553756-chr9:101569289..101571539,3	MCF-7	breast:

No data

Variant related genes	Relation type
GALNT12	TF binding region
ENSG00000270412	Chromatin interaction
ENSG00000165138	Chromatin interaction
ENSG00000204291	Chromatin interaction
ENSG00000119514	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3410897	chr9:101569181-101571179	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101559600-101569600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:101567400-101569600	Enhancers	HMEC	breast
3	chr9:101567600-101569600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101567600-101569600	Enhancers	Gastric	stomach
5	chr9:101567600-101569600	Enhancers	NHEK	skin
6	chr9:101567600-101570000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:101567800-101569800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:101567800-101569800	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr9:101568200-101569800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr9:101568400-101570600	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr9:101568800-101569800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr9:101569000-101569600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:101569000-101569600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101569000-101569600	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:101569000-101569600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr9:101569000-101569600	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr9:101569000-101569600	Bivalent Enhancer	Fetal Thymus	thymus
18	chr9:101569000-101569600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr9:101569000-101569600	Bivalent Enhancer	NHLF	lung
20	chr9:101569000-101569800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:101569000-101570400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr9:101569200-101569600	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:101569200-101569600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:101569200-101569600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:101569200-101569600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:101569200-101569600	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr9:101569200-101569600	Flanking Active TSS	Fetal Brain Male	brain
28	chr9:101569200-101569600	Flanking Active TSS	Pancreas	Pancrea
29	chr9:101569200-101569600	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr9:101569200-101569600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr9:101569200-101569600	Bivalent Enhancer	HSMMtube	muscle
32	chr9:101569200-101569600	Bivalent Enhancer	NHDF-Ad	bronchial
33	chr9:101569200-101569600	Bivalent Enhancer	Osteobl	bone
34	chr9:101569200-101569800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:101569200-101569800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr9:101569200-101569800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr9:101569200-101569800	Flanking Active TSS	Colonic Mucosa	Colon
38	chr9:101569200-101569800	Bivalent/Poised TSS	NH-A	brain
39	chr9:101569200-101570200	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr9:101569200-101570400	Active TSS	Fetal Brain Female	brain
41	chr9:101569200-101571200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
43	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
44	chr9:101569400-101569600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:101569400-101569600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
48	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
49	chr9:101569400-101569600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:101569400-101569600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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