Variant report
| Variant | esv3416441 |
|---|---|
| Chromosome Location | chr3:79286587-79286972 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs200900532 | chr3:79286600-79286601 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs533727710 | chr3:79286610-79286611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs324752 | chr3:79286618-79286619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs557521562 | chr3:79286625-79286626 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs368063890 | chr3:79286631-79286632 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs201288127 | chr3:79286643-79286644 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs201874731 | chr3:79286644-79286645 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs188262871 | chr3:79286708-79286709 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs149847339 | chr3:79286726-79286727 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs144821151 | chr3:79286743-79286744 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs572672756 | chr3:79286799-79286800 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs11924816 | chr3:79286801-79286802 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs543339039 | chr3:79286817-79286818 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs562940769 | chr3:79286825-79286826 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs180673265 | chr3:79286833-79286834 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs558880048 | chr3:79286868-79286869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs115084650 | chr3:79286873-79286874 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs371313381 | chr3:79286948-79286949 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs374231628 | chr3:79286960-79286961 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:75)
| Disease | PMID | Source |
|---|---|---|
| Acute myeloid leukemia | 20729466 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Melanoma | 18172304 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Insulin resistance | 16721378 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Oral cancer | 19627613 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Epithelial cancer | 22065749 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Pancreatic endocrine tumor | 20981439 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Uveal melanoma | 21693616 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Esophageal cancer | 20955586 | CNVD |
| Uveal melanoma | 20484589 | CNVD |
| Autism | 22495311 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Cancer | 21183584 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Bipolar disorder | 20877625 | CNVD |
| Bipolar disorder | 21956041 | CNVD |
| Bipolar disorder | 22241247 | CNVD |
| Biliary cancer | 18923514 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Cancer | 21129771 | CNVD |
| Congenital diaphragmatic hernia | 21085971 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Acute lymphoblastic leukemia | 18458336 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Cancer | 20164919 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Bipolar disorder | 18458673 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 21399695 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Soft tissue tumor | 16732325 | CNVD |
| Breast cancer | 21858162 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Colorectal cancer | 16912164 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:79272600-79294800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
