Variant report

Variant	rs11924816
Chromosome Location	chr3:79286801-79286802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511123	0.84[YRI][hapmap]
rs11920038	1.00[GIH][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.84[YRI][hapmap]
rs11920171	0.86[ASW][hapmap];1.00[GIH][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923133	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016763	0.86[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17044180	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs17336055	0.89[TSI][hapmap]
rs17395825	0.81[EUR][1000 genomes]
rs4405871	0.93[EUR][1000 genomes]
rs59193819	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768393	0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6782878	0.86[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.84[YRI][hapmap]
rs6801676	0.80[EUR][1000 genomes]
rs716681	0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs7639472	0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3416441	chr3:79286587-79286972	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79272600-79294800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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