Variant report

Variant	rs11920171
Chromosome Location	chr3:79272194-79272195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11920038	0.92[ASW][hapmap];1.00[GIH][hapmap]
rs11923133	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924816	0.86[ASW][hapmap];1.00[GIH][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016763	1.00[ASW][hapmap];1.00[GIH][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17044180	1.00[GIH][hapmap]
rs17395825	0.81[EUR][1000 genomes]
rs4405871	0.93[EUR][1000 genomes]
rs59193819	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768393	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6782878	1.00[ASW][hapmap];1.00[GIH][hapmap]
rs6801676	0.80[EUR][1000 genomes]
rs716681	0.93[EUR][1000 genomes]
rs7639472	0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79270200-79272200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:79272000-79272800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:79272000-79273000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:79272000-79273000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:79272000-79273600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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