Variant report

Variant	rs17016763
Chromosome Location	chr3:79205480-79205481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511123	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs11920038	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs11920171	1.00[ASW][hapmap];1.00[GIH][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11923133	0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11924816	0.86[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11925923	0.87[TSI][hapmap]
rs17044180	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4334606	0.87[TSI][hapmap]
rs4405871	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4532095	0.87[TSI][hapmap]
rs59193819	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6768393	0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6782878	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs716681	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7639472	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79203800-79209800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:79204600-79210200	Weak transcription	Fetal Brain Female	brain
3	chr3:79205000-79209400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:79205400-79205600	Enhancers	Fetal Heart	heart
5	chr3:79205400-79206200	Weak transcription	Fetal Brain Male	brain
6	chr3:79205400-79209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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