Variant report

Variant	rs17336055
Chromosome Location	chr3:79293295-79293296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11709210	0.87[AFR][1000 genomes]
rs11924816	0.89[TSI][hapmap]
rs11925014	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11925923	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11928467	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1378635	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1378636	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17016815	0.81[AMR][1000 genomes]
rs17016836	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17395825	0.82[ASW][hapmap];0.91[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2124389	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2124390	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2168372	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34673005	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4334606	1.00[GIH][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4519664	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4532095	1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5016999	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6766824	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6786720	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6791591	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6804495	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6804803	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7611697	0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7617560	0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7618349	0.82[ASW][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap]
rs7622139	0.86[LWK][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs966144	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460727	chr3:79264611-79406519	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590736	chr3:79264611-79406519	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79272600-79294800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:79291800-79294400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:79291800-79294800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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