Variant report

Variant	rs5016999
Chromosome Location	chr3:79225603-79225604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11925014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11925923	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11928467	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1378635	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1378636	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17016815	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17016836	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17336055	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2124389	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2124390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2168372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34673005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4334606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4519664	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4532095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6766824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6786720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6791591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6804495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6804803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7611697	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7617560	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs966144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79217400-79226400	Weak transcription	Brain Germinal Matrix	brain
2	chr3:79219600-79226400	Weak transcription	Fetal Heart	heart
3	chr3:79219600-79227800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:79219600-79228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:79224600-79227400	Enhancers	Fetal Brain Female	brain
6	chr3:79225400-79227600	Weak transcription	NHDF-Ad	bronchial
7	chr3:79225400-79232800	Weak transcription	Fetal Stomach	stomach

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