Variant report

Variant	rs17016815
Chromosome Location	chr3:79251237-79251238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11922032	1.00[CEU][hapmap]
rs11925014	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11925923	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11928467	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1378635	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1378636	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1563382	1.00[ASN][1000 genomes]
rs17016804	1.00[CEU][hapmap]
rs17016836	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17336055	0.81[AMR][1000 genomes]
rs1809208	1.00[ASN][1000 genomes]
rs1869801	1.00[ASN][1000 genomes]
rs2124389	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2124390	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2168372	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs324755	1.00[ASN][1000 genomes]
rs324756	1.00[ASN][1000 genomes]
rs34673005	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4334606	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4519664	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4532095	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4533610	1.00[ASN][1000 genomes]
rs5016999	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6766824	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6786720	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6791591	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804495	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804803	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs716681	1.00[CEU][hapmap]
rs7611697	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7617560	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs966144	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9809987	1.00[ASN][1000 genomes]
rs9813399	1.00[ASN][1000 genomes]
rs9815951	1.00[ASN][1000 genomes]
rs9845808	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3423161	chr3:79249062-79253860	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79248600-79251800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:79248600-79251800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:79248800-79251800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:79249200-79252600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:79249800-79252000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:79250000-79251400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:79250000-79251400	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:79250000-79251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:79250000-79252000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:79250200-79252000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:79251200-79251400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:79251200-79251800	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links