Variant report

Variant	rs9845808
Chromosome Location	chr3:79248828-79248829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11918897	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13084055	1.00[CHB][hapmap]
rs1563382	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17016815	1.00[ASN][1000 genomes]
rs1809208	1.00[ASN][1000 genomes]
rs1869801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324755	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs324756	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4533610	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809987	1.00[ASN][1000 genomes]
rs9813399	1.00[ASN][1000 genomes]
rs9815951	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79248400-79250200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:79248600-79249800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:79248600-79250000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:79248600-79251800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:79248600-79251800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:79248800-79250000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:79248800-79250000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:79248800-79250000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:79248800-79251800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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