Variant report

Variant	esv3418056
Chromosome Location	chr8:69817398-69819896
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69813641..69815501-chr8:69817466..69820141,2	MCF-7	breast:

Extended variants
information (count: 181 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:181 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541453156	chr8:69817417-69817418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs560449783	chr8:69817475-69817476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186102270	chr8:69817476-69817477	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564631383	chr8:69817491-69817492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573161680	chr8:69817516-69817517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150148696	chr8:69817523-69817524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189769291	chr8:69817540-69817541	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568997376	chr8:69817579-69817580	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs531419293	chr8:69817585-69817586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551216425	chr8:69817592-69817593	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs138751815	chr8:69817617-69817618	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62511328	chr8:69817618-69817619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs141898527	chr8:69817628-69817629	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144934233	chr8:69817631-69817632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138817155	chr8:69817632-69817633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536593754	chr8:69817670-69817671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75822731	chr8:69817678-69817679	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558971158	chr8:69817737-69817738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs376311428	chr8:69817747-69817748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs576589940	chr8:69817789-69817790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545607984	chr8:69817802-69817803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs529621467	chr8:69817806-69817807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558749994	chr8:69817827-69817828	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs546683720	chr8:69817829-69817830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs181465000	chr8:69817838-69817839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370224702	chr8:69817842-69817843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554207914	chr8:69817844-69817845	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs149367223	chr8:69817845-69817846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561313671	chr8:69817858-69817859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529192544	chr8:69817860-69817861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs60955358	chr8:69817870-69817871	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs78865636	chr8:69817880-69817881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371808966	chr8:69817884-69817885	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs386726449	chr8:69817907-69817908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564595425	chr8:69817908-69817909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527386972	chr8:69817939-69817940	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372934585	chr8:69817940-69817941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546984440	chr8:69817952-69817953	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs566960069	chr8:69817973-69817974	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11990566	chr8:69818014-69818015	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs550182006	chr8:69818019-69818020	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185837242	chr8:69818033-69818034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs148882935	chr8:69818038-69818039	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538817531	chr8:69818068-69818069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559198592	chr8:69818082-69818083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs34447289	chr8:69818091-69818092	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572569969	chr8:69818110-69818111	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535166183	chr8:69818161-69818162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77368393	chr8:69818165-69818166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574912483	chr8:69818169-69818170	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Sezary syndrome	18413736	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
head and neck squamous cell carcinoma	16715129	CNVD
Prostate cancer	16461572	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Colorectal cancer	21645411	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69817200-69818200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:69818200-69824800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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