Variant report

Variant	rs11990566
Chromosome Location	chr8:69818014-69818015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69813641..69815501-chr8:69817466..69820141,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11987357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992606	1.00[AMR][1000 genomes]
rs11993027	1.00[AMR][1000 genomes]
rs11993569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996301	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997352	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378662	0.88[AFR][1000 genomes]
rs61525619	1.00[AMR][1000 genomes]
rs6472425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273705	1.00[AMR][1000 genomes]
rs73273709	1.00[AMR][1000 genomes]
rs73273715	1.00[AMR][1000 genomes]
rs73273717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273744	1.00[AFR][1000 genomes]
rs73273752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277037	1.00[AFR][1000 genomes]
rs73277039	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277047	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277064	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289418	0.88[AFR][1000 genomes]
rs73289438	1.00[AMR][1000 genomes]
rs73289447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289451	1.00[AMR][1000 genomes]
rs73289458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825299	1.00[AMR][1000 genomes]
rs7831894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3419713	chr8:69816498-69820696	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3418056	chr8:69817398-69819896	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69817200-69818200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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