Variant report

Variant	rs6472426
Chromosome Location	chr8:69799717-69799718
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11987357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992606	1.00[AMR][1000 genomes]
rs11993027	1.00[AMR][1000 genomes]
rs11993569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996301	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997352	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378662	0.88[AFR][1000 genomes]
rs61525619	1.00[AMR][1000 genomes]
rs6472425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273705	1.00[AMR][1000 genomes]
rs73273709	1.00[AMR][1000 genomes]
rs73273715	1.00[AMR][1000 genomes]
rs73273717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273744	1.00[AFR][1000 genomes]
rs73273752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277037	1.00[AFR][1000 genomes]
rs73277039	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277047	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277064	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289418	0.88[AFR][1000 genomes]
rs73289438	1.00[AMR][1000 genomes]
rs73289447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289451	1.00[AMR][1000 genomes]
rs73289458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825299	1.00[AMR][1000 genomes]
rs7831894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69797000-69806200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69797600-69800000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:69797800-69802200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:69799000-69800800	Enhancers	NHDF-Ad	bronchial
5	chr8:69799200-69800600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:69799600-69800600	Enhancers	Muscle Satellite Cultured Cells	--

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