Variant report

Variant	rs73277045
Chromosome Location	chr8:69825290-69825291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-664D7.4.1-3	chr8:69825198-69825775	ENSG00000253658.1
2	lnc-RP11-664D7.4.1-3	chr8:69824038-69825775	ENSG00000253658.1

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11987357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990467	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992606	1.00[AMR][1000 genomes]
rs11993027	1.00[AMR][1000 genomes]
rs11993569	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994613	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996301	1.00[AMR][1000 genomes]
rs11997352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61525619	1.00[AMR][1000 genomes]
rs6472425	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472426	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006249	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273705	1.00[AMR][1000 genomes]
rs73273709	1.00[AMR][1000 genomes]
rs73273715	1.00[AMR][1000 genomes]
rs73273717	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273744	0.88[AFR][1000 genomes]
rs73273752	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273757	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277037	0.88[AFR][1000 genomes]
rs73277039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277066	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289438	1.00[AMR][1000 genomes]
rs73289447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289451	1.00[AMR][1000 genomes]
rs73289458	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825299	1.00[AMR][1000 genomes]
rs7831894	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69823000-69829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:69824600-69825600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:69824800-69825400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:69825200-69825400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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