Variant report
| Variant | rs11992606 |
|---|---|
| Chromosome Location | chr8:69820239-69820240 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11987357 | 1.00[AMR][1000 genomes] |
| rs11990467 | 1.00[AMR][1000 genomes] |
| rs11990566 | 1.00[AMR][1000 genomes] |
| rs11993027 | 1.00[AMR][1000 genomes] |
| rs11993569 | 1.00[AMR][1000 genomes] |
| rs11993607 | 1.00[AMR][1000 genomes] |
| rs11993615 | 1.00[AMR][1000 genomes] |
| rs11994613 | 1.00[AMR][1000 genomes] |
| rs11996301 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11997352 | 1.00[AMR][1000 genomes] |
| rs61525619 | 1.00[AMR][1000 genomes] |
| rs6472425 | 1.00[AMR][1000 genomes] |
| rs6472426 | 1.00[AMR][1000 genomes] |
| rs7006249 | 1.00[AMR][1000 genomes] |
| rs73273705 | 1.00[AMR][1000 genomes] |
| rs73273709 | 1.00[AMR][1000 genomes] |
| rs73273715 | 1.00[AMR][1000 genomes] |
| rs73273717 | 1.00[AMR][1000 genomes] |
| rs73273752 | 1.00[AMR][1000 genomes] |
| rs73273757 | 1.00[AMR][1000 genomes] |
| rs73277039 | 1.00[AMR][1000 genomes] |
| rs73277040 | 1.00[AMR][1000 genomes] |
| rs73277041 | 1.00[AMR][1000 genomes] |
| rs73277045 | 1.00[AMR][1000 genomes] |
| rs73277047 | 1.00[AMR][1000 genomes] |
| rs73277064 | 1.00[AMR][1000 genomes] |
| rs73277066 | 1.00[AMR][1000 genomes] |
| rs73289438 | 1.00[AMR][1000 genomes] |
| rs73289447 | 1.00[AMR][1000 genomes] |
| rs73289451 | 1.00[AMR][1000 genomes] |
| rs73289458 | 1.00[AMR][1000 genomes] |
| rs7819864 | 1.00[AMR][1000 genomes] |
| rs7825299 | 1.00[AMR][1000 genomes] |
| rs7831894 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033122 | chr8:69728620-69843088 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031633 | chr8:69766575-70322790 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv3419713 | chr8:69816498-69820696 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69808000-69833000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr8:69818200-69824800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
