Variant report

Variant	rs73289458
Chromosome Location	chr8:69782041-69782042
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69781287..69782910-chr8:69784282..69786864,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11987357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990467	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992606	1.00[AMR][1000 genomes]
rs11993027	1.00[AMR][1000 genomes]
rs11993569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996301	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997352	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378662	0.94[AFR][1000 genomes]
rs61525619	1.00[AMR][1000 genomes]
rs6472425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273705	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273715	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273744	0.94[AFR][1000 genomes]
rs73273752	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277037	0.94[AFR][1000 genomes]
rs73277039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277040	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277045	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277066	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289418	0.94[AFR][1000 genomes]
rs73289438	1.00[AMR][1000 genomes]
rs73289447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289451	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825299	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69773200-69782800	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:69779200-69782600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:69779400-69782800	Weak transcription	Osteobl	bone
4	chr8:69779400-69783200	Weak transcription	NHDF-Ad	bronchial
5	chr8:69781200-69783800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:69782000-69782800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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