Variant report

Variant	esv3419155
Chromosome Location	chr6:69607518-69607867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69602185..69604061-chr6:69605496..69607741,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531008713	chr6:69607536-69607537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533214760	chr6:69607615-69607616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544338431	chr6:69607642-69607643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375669903	chr6:69607653-69607654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs373887607	chr6:69607654-69607655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563985117	chr6:69607663-69607664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532946197	chr6:69607665-69607666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546252226	chr6:69607677-69607678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377632468	chr6:69607694-69607695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111410174	chr6:69607707-69607708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529231385	chr6:69607722-69607723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370291845	chr6:69607754-69607755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs6922823	chr6:69607756-69607757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs79841263	chr6:69607781-69607782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74600011	chr6:69607784-69607785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569112968	chr6:69607787-69607788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs541416270	chr6:69607834-69607835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537599700	chr6:69607855-69607856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551056668	chr6:69607867-69607868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69601200-69609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69601600-69610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69602800-69621000	Weak transcription	Fetal Lung	lung

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