Variant report

Variant	rs6922823
Chromosome Location	chr6:69607756-69607757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10806607	0.82[ASN][1000 genomes]
rs10945147	0.82[ASN][1000 genomes]
rs10945148	0.82[ASN][1000 genomes]
rs12174093	0.83[ASN][1000 genomes]
rs1403926	0.83[ASN][1000 genomes]
rs1523936	0.83[ASN][1000 genomes]
rs1523938	0.90[ASN][1000 genomes]
rs2224011	0.82[ASN][1000 genomes]
rs4706061	0.83[ASN][1000 genomes]
rs4706712	0.83[ASN][1000 genomes]
rs478789	0.83[ASN][1000 genomes]
rs487492	0.80[ASN][1000 genomes]
rs491833	0.83[ASN][1000 genomes]
rs497728	0.82[ASN][1000 genomes]
rs501856	0.80[ASN][1000 genomes]
rs504160	0.83[ASN][1000 genomes]
rs509304	0.83[ASN][1000 genomes]
rs512094	0.81[ASN][1000 genomes]
rs522513	0.82[ASN][1000 genomes]
rs525342	0.82[ASN][1000 genomes]
rs527932	0.82[ASN][1000 genomes]
rs530244	0.83[ASN][1000 genomes]
rs547423	0.80[ASN][1000 genomes]
rs550348	0.83[ASN][1000 genomes]
rs550695	0.83[ASN][1000 genomes]
rs553613	0.82[ASN][1000 genomes]
rs558452	0.83[ASN][1000 genomes]
rs579773	0.81[ASN][1000 genomes]
rs6906092	0.81[ASN][1000 genomes]
rs6920573	0.82[ASN][1000 genomes]
rs6927848	0.83[ASN][1000 genomes]
rs6941602	0.82[ASN][1000 genomes]
rs9342736	0.82[ASN][1000 genomes]
rs9346252	0.82[ASN][1000 genomes]
rs9351741	0.81[ASN][1000 genomes]
rs9446070	0.88[ASN][1000 genomes]
rs9454636	0.83[ASN][1000 genomes]
rs9454639	0.82[ASN][1000 genomes]
rs9689807	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3369451	chr6:69607517-69607973	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3419155	chr6:69607518-69607867	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69601200-69609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69601600-69610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69602800-69621000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links