Variant report

Variant	esv3424735
Chromosome Location	chr1:179559954-179562502
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:168)
CpG islands
(count:549)
Chromatin interactive
region (count:2)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:168 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr1:179560494-179560764	H1-hESC	embryonic stem cell:	n/a	n/a
2	CHD2	chr1:179560743-179561609	H1-hESC	embryonic stem cell:	n/a	chr1:179561352-179561359
3	CREB1	chr1:179560584-179561320	H1-hESC	embryonic stem cell:	n/a	n/a
4	CREB1	chr1:179560520-179561044	A549	lung:	n/a	n/a
5	CTCF	chr1:179561340-179561490	MCF-7	breast:	n/a	n/a
6	CTCF	chr1:179561120-179561270	A549	lung:	n/a	n/a
7	CTCF	chr1:179561220-179561370	GM12874	blood:	n/a	n/a
8	CTCF	chr1:179561113-179561626	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr1:179560940-179561090	HRPEpiC	eye:	n/a	n/a
10	CTCF	chr1:179561025-179561244	MCF-7	breast:	n/a	chr1:179561092-179561105
11	CTCF	chr1:179561120-179561270	MCF-7	breast:	n/a	n/a
12	CTCF	chr1:179561100-179561250	GM12871	blood:	n/a	n/a
13	CTCF	chr1:179561920-179562070	MCF-7	breast:	n/a	n/a
14	CTCF	chr1:179560874-179561456	MCF-7	breast:	n/a	chr1:179561092-179561105
15	CTCF	chr1:179561100-179561250	GM12873	blood:	n/a	n/a
16	CTCF	chr1:179560615-179561099	T-47D	breast:	n/a	n/a
17	CTCF	chr1:179561300-179561450	MCF-7	breast:	n/a	n/a
18	CTCF	chr1:179560720-179560870	GM12869	blood:	n/a	n/a
19	CTCF	chr1:179560620-179560770	Caco-2	colon:	n/a	n/a
20	CTCF	chr1:179561320-179561470	HEK293	kidney:	n/a	n/a
21	CTCF	chr1:179561360-179561510	HMEC	breast:	n/a	n/a
22	CTCF	chr1:179561240-179561390	GM12864	blood:	n/a	n/a
23	CTCF	chr1:179560720-179560870	BE2_C	brain:	n/a	n/a
24	CTCF	chr1:179561100-179561250	MCF-7	breast:	n/a	n/a
25	CTCF	chr1:179561260-179561410	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr1:179561280-179561430	GM12875	blood:	n/a	n/a
27	CTCF	chr1:179561240-179561390	GM12874	blood:	n/a	n/a
28	CTCF	chr1:179561326-179561432	MCF-7	breast:	n/a	n/a
29	CTCF	chr1:179561214-179561493	K562	blood:	n/a	n/a
30	CTCF	chr1:179560698-179560802	MCF-7	breast:	n/a	n/a
31	CTCF	chr1:179561021-179561074	Pancreas_OC	pancreas:	n/a	n/a
32	CTCF	chr1:179561380-179561530	BE2_C	brain:	n/a	n/a
33	CTCF	chr1:179560102-179560140	MCF-7	breast:	n/a	n/a
34	CTCF	chr1:179561140-179561290	HRE	kidney:	n/a	n/a
35	CTCF	chr1:179561300-179561450	Hela-S3	cervix:	n/a	n/a
36	CTCF	chr1:179561280-179561430	A549	lung:	n/a	n/a
37	CTCF	chr1:179560909-179560994	NHEK	skin:	n/a	n/a
38	CTCF	chr1:179561340-179561490	WERI-Rb-1	eye:	n/a	n/a
39	CTCF	chr1:179561260-179561410	HepG2	liver:	n/a	n/a
40	CTCF	chr1:179561300-179561450	K562	blood:	n/a	n/a
41	CTCF	chr1:179560820-179560970	HUVEC	blood vessel:	n/a	n/a
42	CTCF	chr1:179561280-179561430	NHEK	skin:	n/a	n/a
43	CTCF	chr1:179561240-179561390	NHEK	skin:	n/a	n/a
44	CTCF	chr1:179561240-179561390	K562	blood:	n/a	n/a
45	CTCF	chr1:179560677-179560817	MCF-7	breast:	n/a	n/a
46	CTCF	chr1:179561260-179561410	GM12873	blood:	n/a	n/a
47	CTCF	chr1:179560980-179561130	A549	lung:	n/a	chr1:179561092-179561105
48	CTCF	chr1:179561213-179561534	K562	blood:	n/a	n/a
49	CTCF	chr1:179560881-179561444	MCF-7	breast:	n/a	chr1:179561092-179561105
50	CTCF	chr1:179560980-179561130	BE2_C	brain:	n/a	chr1:179561092-179561105

(count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:179560121-179560171	PANC-1	pancreas:	n/a
2	chr1:179560752-179560802	AG09309	skin:	n/a
3	chr1:179560700-179560750	BE2_C	brain:	n/a
4	chr1:179560870-179560920	NH-A	brain:	n/a
5	chr1:179560700-179560750	HRPEpiC	eye:	n/a
6	chr1:179560983-179561033	BE2_C	brain:	n/a
7	chr1:179560870-179560920	BJ	skin:	n/a
8	chr1:179561500-179561550	ECC-1	luminal epithelium:	n/a
9	chr1:179560121-179560171	NHBE	bronchial:	n/a
10	chr1:179560752-179560802	SK-N-SH	brain:	n/a
11	chr1:179560870-179560920	HIPEpiC	eye:	n/a
12	chr1:179561111-179561161	ProgFib	skin:	n/a
13	chr1:179560752-179560802	HCT-116	colon:	n/a
14	chr1:179561347-179561397	HEK293	kidney:	embryo
15	chr1:179560870-179560920	GM12878	blood:	n/a
16	chr1:179561500-179561550	HCM	heart:	n/a
17	chr1:179560983-179561033	HEK293	kidney:	embryo
18	chr1:179560870-179560920	LNCaP	prostate:	n/a
19	chr1:179560700-179560750	Hela-S3	cervix:	n/a
20	chr1:179560983-179561033	HCT-116	colon:	n/a
21	chr1:179561500-179561550	HRCEpiC	kidney:	n/a
22	chr1:179560121-179560171	SK-N-SH	brain:	n/a
23	chr1:179560121-179560171	HPAEpiC	pulmonary alveolar:	n/a
24	chr1:179560754-179560804	NHDF-neo	bronchial:	n/a
25	chr1:179560752-179560802	HIPEpiC	eye:	n/a
26	chr1:179560752-179560802	Caco-2	colon:	n/a
27	chr1:179561500-179561550	PrEC	prostate:	n/a
28	chr1:179561347-179561397	RPTEC	kidney:	n/a
29	chr1:179560121-179560171	AG09309	skin:	n/a
30	chr1:179561111-179561161	SK-N-SH	brain:	n/a
31	chr1:179560983-179561033	GM19239	blood:	n/a
32	chr1:179560870-179560920	PANC-1	pancreas:	n/a
33	chr1:179561111-179561161	HAEpiC	amniotic membrane:	n/a
34	chr1:179560754-179560804	HRCEpiC	kidney:	n/a
35	chr1:179560752-179560802	AG04449	skin:	fetal
36	chr1:179560700-179560750	HCPEpiC	choroid plexus:	n/a
37	chr1:179560700-179560750	GM12891	blood:	n/a
38	chr1:179560754-179560804	IMR90	lung:	fetal
39	chr1:179561111-179561161	ovcar-3	ovarian:	n/a
40	chr1:179560700-179560750	MCF-7	breast:	n/a
41	chr1:179560983-179561033	SAEC	small airway:	n/a
42	chr1:179560870-179560920	U87	brain:	n/a
43	chr1:179560870-179560920	SK-N-SH_RA	brain:	n/a
44	chr1:179561347-179561397	LNCaP	prostate:	n/a
45	chr1:179560754-179560804	HCT-116	colon:	n/a
46	chr1:179560700-179560750	IMR90	lung:	fetal
47	chr1:179560121-179560171	IMR90	lung:	fetal
48	chr1:179560700-179560750	AoSMC	blood vessel:	n/a
49	chr1:179560870-179560920	T-47D	breast:	n/a
50	chr1:179561111-179561161	RPTEC	kidney:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:
2	chr1:179561671..179563939-chr1:179566117..179567690,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPHS2-3	chr1:179560011-179560175	NONHSAT008198
2	lnc-NPHS2-3	chr1:179560750-179561522	NONHSAT008198
3	lnc-TDRD5-1	chr1:179559507-179560440	ENSG00000261060.1

No data

Variant related genes	Relation type
TDRD5	TF binding region
TDRD5	CpG island
ENSG00000227141	chromatin interactions

Extended variants
information (count: 115 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:115 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138391621	chr1:179559967-179559968	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs200309087	chr1:179559969-179559970	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs398103412	chr1:179559970-179559971	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs573698468	chr1:179560020-179560021	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs542331376	chr1:179560027-179560028	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs562311603	chr1:179560031-179560032	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs531087302	chr1:179560046-179560047	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs544962048	chr1:179560050-179560051	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs34437979	chr1:179560067-179560068	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs564766840	chr1:179560107-179560108	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs555199549	chr1:179560142-179560143	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs6691184	chr1:179560154-179560155	Weak transcription Enhancers	CpG island Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs200178894	chr1:179560200-179560201	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs77022747	chr1:179560207-179560208	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs192337606	chr1:179560213-179560214	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs544137006	chr1:179560234-179560235	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs149286315	chr1:179560238-179560239	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs112425250	chr1:179560309-179560310	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs568718826	chr1:179560313-179560314	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
20	rs185728563	chr1:179560352-179560353	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
21	rs80209387	chr1:179560375-179560376	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs79194538	chr1:179560376-179560377	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
23	rs554798292	chr1:179560489-179560490	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs537637897	chr1:179560508-179560509	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs146272966	chr1:179560517-179560518	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs562342486	chr1:179560520-179560521	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs571194443	chr1:179560590-179560591	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs1999069	chr1:179560624-179560625	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs553753740	chr1:179560669-179560670	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs575136130	chr1:179560671-179560672	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs139381794	chr1:179560689-179560690	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs536357614	chr1:179560691-179560692	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs1999068	chr1:179560718-179560719	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs575957142	chr1:179560722-179560723	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs544798025	chr1:179560739-179560740	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs547775641	chr1:179560753-179560754	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs578253736	chr1:179560784-179560785	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs540541353	chr1:179560787-179560788	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs560540379	chr1:179560805-179560806	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs189453492	chr1:179560820-179560821	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs529230179	chr1:179560862-179560863	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs111629501	chr1:179560927-179560928	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs549493329	chr1:179560937-179560938	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs114611344	chr1:179561017-179561018	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs144210511	chr1:179561021-179561022	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs531438592	chr1:179561026-179561027	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs113600465	chr1:179561030-179561031	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs551179057	chr1:179561130-179561131	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs76644806	chr1:179561154-179561155	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	mRNA abundance
50	rs534097830	chr1:179561155-179561156	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	16750200	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Glioblastoma multiforme	17369134	CNVD
Cancer	17440070	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21611746	CNVD
Breast cancer	16397240	CNVD
Mental retardation	17847001	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	23248035	CNVD
Metanephric adenoma	20802469	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179556000-179560600	Weak transcription	Right Atrium	heart
2	chr1:179558200-179560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:179560000-179560400	Enhancers	Brain Germinal Matrix	brain
4	chr1:179560400-179560600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
5	chr1:179560400-179560600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:179560400-179560600	Bivalent Enhancer	Adipose Nuclei	Adipose
7	chr1:179560400-179560600	Bivalent Enhancer	Brain Germinal Matrix	brain
8	chr1:179560400-179560600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:179560400-179560600	Bivalent Enhancer	Fetal Kidney	kidney
10	chr1:179560400-179560600	Enhancers	Pancreas	Pancrea
11	chr1:179560400-179560600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
12	chr1:179560400-179560800	Enhancers	Stomach Mucosa	stomach
13	chr1:179560400-179561000	Active TSS	Duodenum Mucosa	Duodenum
14	chr1:179560400-179561000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr1:179560400-179561400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr1:179560400-179561400	Bivalent Enhancer	Fetal Brain Male	brain
17	chr1:179560600-179560800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:179560600-179560800	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:179560600-179560800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:179560600-179560800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:179560600-179560800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:179560600-179560800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:179560600-179560800	Bivalent Enhancer	Brain Hippocampus Middle	brain
24	chr1:179560600-179560800	Active TSS	Colonic Mucosa	Colon
25	chr1:179560600-179560800	Bivalent Enhancer	Esophagus	oesophagus
26	chr1:179560600-179560800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
27	chr1:179560600-179560800	Flanking Bivalent TSS/Enh	Placenta	Placenta
28	chr1:179560600-179560800	Enhancers	Gastric	stomach
29	chr1:179560600-179560800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr1:179560600-179560800	Bivalent Enhancer	Right Ventricle	heart
31	chr1:179560600-179560800	Active TSS	A549	lung
32	chr1:179560600-179560800	Bivalent Enhancer	HMEC	breast
33	chr1:179560600-179560800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
34	chr1:179560600-179561000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
35	chr1:179560600-179561000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:179560600-179561000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr1:179560600-179561000	Flanking Active TSS	Right Atrium	heart
38	chr1:179560600-179561000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
39	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
40	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr1:179560600-179561200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
43	chr1:179560600-179561200	Bivalent/Poised TSS	Fetal Stomach	stomach
44	chr1:179560600-179561200	Flanking Active TSS	Pancreas	Pancrea
45	chr1:179560600-179561200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr1:179560600-179561200	Bivalent/Poised TSS	NHEK	skin
47	chr1:179560600-179561400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

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