Variant report

Variant	rs531438592
Chromosome Location	chr1:179561026-179561027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPHS2-3	chr1:179560750-179561522	NONHSAT008198

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424735	chr1:179559954-179562502	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179560400-179561400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:179560400-179561400	Bivalent Enhancer	Fetal Brain Male	brain
3	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
4	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:179560600-179561200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
6	chr1:179560600-179561200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr1:179560600-179561200	Bivalent/Poised TSS	Fetal Stomach	stomach
8	chr1:179560600-179561200	Flanking Active TSS	Pancreas	Pancrea
9	chr1:179560600-179561200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
10	chr1:179560600-179561200	Bivalent/Poised TSS	NHEK	skin
11	chr1:179560600-179561400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:179560600-179561400	Active TSS	Brain Anterior Caudate	brain
16	chr1:179560600-179561400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
17	chr1:179560600-179561400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
18	chr1:179560600-179561400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
19	chr1:179560600-179561400	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr1:179560600-179561400	Bivalent Enhancer	Fetal Heart	heart
21	chr1:179560600-179561400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr1:179560600-179561400	Bivalent Enhancer	Spleen	Spleen
23	chr1:179560600-179561600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr1:179560600-179562000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr1:179560800-179561200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:179560800-179561200	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
27	chr1:179560800-179561200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:179560800-179561200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
29	chr1:179560800-179561200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
30	chr1:179560800-179561200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
31	chr1:179560800-179561200	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr1:179560800-179561200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
33	chr1:179560800-179561400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
34	chr1:179560800-179561400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:179560800-179561400	ZNF genes & repeats	Lung	lung
36	chr1:179560800-179561400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
37	chr1:179560800-179561400	Bivalent/Poised TSS	A549	lung
38	chr1:179560800-179561400	Flanking Bivalent TSS/Enh	HMEC	breast
39	chr1:179560800-179561600	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr1:179561000-179561200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:179561000-179561200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:179561000-179561200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:179561000-179561200	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:179561000-179561200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
45	chr1:179561000-179561200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr1:179561000-179561200	Active TSS	Gastric	stomach
47	chr1:179561000-179561200	Bivalent Enhancer	Ovary	ovary
48	chr1:179561000-179561200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr1:179561000-179561200	Transcr. at gene 5' and 3'	Right Atrium	heart
50	chr1:179561000-179561200	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood

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