Variant report

Variant	esv3424905
Chromosome Location	chr10:116941162-116945560
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116940963..116942966-chr10:116944377..116947212,2	MCF-7	breast:
2	chr10:116940963..116942966-chr10:116944377..116947212,2	MCF-7	breast:
3	chr10:116931808..116934007-chr10:116939666..116942604,2	MCF-7	breast:

Extended variants
information (count: 136 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:136 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527344264	chr10:116941168-116941169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567103719	chr10:116941256-116941257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs1269602	chr10:116941272-116941273	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs549432047	chr10:116941289-116941290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs571033156	chr10:116941322-116941323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79355134	chr10:116941329-116941330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs567290631	chr10:116941363-116941364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557966402	chr10:116941428-116941429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs573475145	chr10:116941482-116941483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190590752	chr10:116941500-116941501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs181421391	chr10:116941501-116941502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550545530	chr10:116941507-116941508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186300309	chr10:116941568-116941569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs151064666	chr10:116941603-116941604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549800495	chr10:116941651-116941652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7915481	chr10:116941667-116941668	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs545212640	chr10:116941756-116941757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190721695	chr10:116941778-116941779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184049588	chr10:116941784-116941785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527484620	chr10:116941803-116941804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73376377	chr10:116941813-116941814	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs373773730	chr10:116941827-116941828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140319836	chr10:116941828-116941829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs549395335	chr10:116941866-116941867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76556384	chr10:116941911-116941912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374795574	chr10:116941933-116941934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368855751	chr10:116941957-116941958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551559373	chr10:116941998-116941999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187752824	chr10:116942015-116942016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs145443170	chr10:116942026-116942027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs17092861	chr10:116942042-116942043	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs575268192	chr10:116942043-116942044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs574302525	chr10:116942065-116942066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566065062	chr10:116942073-116942074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536781535	chr10:116942090-116942091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538225849	chr10:116942132-116942133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs190975352	chr10:116942137-116942138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556634419	chr10:116942165-116942166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138077933	chr10:116942191-116942192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs545472305	chr10:116942213-116942214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs142645327	chr10:116942277-116942278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs183085768	chr10:116942320-116942321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12265099	chr10:116942364-116942365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542830005	chr10:116942389-116942390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577532845	chr10:116942410-116942411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75018322	chr10:116942434-116942435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs543007375	chr10:116942449-116942450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs79642518	chr10:116942462-116942463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150170787	chr10:116942523-116942524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138365704	chr10:116942595-116942596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:116943000-116943400	Enhancers	Pancreatic Islets	Pancreatic Islet

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