Variant report

Variant	rs7915481
Chromosome Location	chr10:116941667-116941668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116940963..116942966-chr10:116944377..116947212,2	MCF-7	breast:
2	chr10:116931808..116934007-chr10:116939666..116942604,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10466204	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10749173	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10787565	1.00[CEU][hapmap]
rs10885652	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs10885665	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs10885679	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11197060	0.80[AFR][1000 genomes]
rs11197067	0.80[AFR][1000 genomes]
rs11197082	0.83[AFR][1000 genomes]
rs11197089	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11197090	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11197092	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs11197096	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11197097	0.83[AFR][1000 genomes]
rs11197104	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs11197113	0.93[YRI][hapmap]
rs11197119	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs11197121	0.82[AFR][1000 genomes]
rs11197158	0.84[EUR][1000 genomes]
rs11197191	0.86[YRI][hapmap]
rs11819446	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12241864	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12245856	0.80[AFR][1000 genomes]
rs12248612	0.82[AFR][1000 genomes]
rs12248846	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs12252039	0.87[YRI][hapmap]
rs12252344	0.87[YRI][hapmap]
rs12255157	0.87[YRI][hapmap];0.80[AFR][1000 genomes]
rs12269283	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs1264747	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1268915	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13376959	0.83[AFR][1000 genomes]
rs1856357	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1953758	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2197305	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs2255916	0.95[EUR][1000 genomes]
rs2264063	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2265929	1.00[CEU][hapmap]
rs2492983	0.89[EUR][1000 genomes]
rs41314493	0.89[EUR][1000 genomes]
rs4409743	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4752730	0.84[EUR][1000 genomes]
rs6585323	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7070487	0.80[AFR][1000 genomes]
rs7074552	1.00[CEU][hapmap]
rs7082007	0.85[YRI][hapmap]
rs7894112	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs7897375	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs7900110	0.80[AFR][1000 genomes]
rs7902966	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs7920260	0.93[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3424905	chr10:116941162-116945560	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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