Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10749173	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs10787565	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap]
rs10885679	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1264747	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264751	0.82[YRI][hapmap]
rs1264753	0.82[YRI][hapmap]
rs1264754	0.82[YRI][hapmap]
rs1264759	0.82[YRI][hapmap]
rs1264780	0.82[YRI][hapmap]
rs1264784	0.82[YRI][hapmap]
rs1264791	0.82[YRI][hapmap]
rs1856357	1.00[CEU][hapmap]
rs1953758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2252475	1.00[YRI][hapmap]
rs2253505	0.82[YRI][hapmap]
rs2255916	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2264063	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs2265929	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2420076	1.00[YRI][hapmap]
rs2440314	1.00[YRI][hapmap]
rs2492983	0.84[EUR][1000 genomes]
rs41314493	0.84[EUR][1000 genomes]
rs4409743	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs6585323	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs677604	1.00[YRI][hapmap]
rs7074552	1.00[CEU][hapmap]
rs7081522	1.00[YRI][hapmap]
rs7915481	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9651421	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116967000-116969400	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:116967000-116980400	Weak transcription	Fetal Kidney	kidney
3	chr10:116968400-116980600	Weak transcription	Aorta	Aorta
4	chr10:116969200-116969600	Enhancers	Pancreatic Islets	Pancreatic Islet

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