Variant report

Variant	rs1264753
Chromosome Location	chr10:116923709-116923710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1264751	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1264752	0.92[AFR][1000 genomes]
rs1264754	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1264759	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1264761	1.00[AFR][1000 genomes]
rs1264780	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1264784	1.00[YRI][hapmap]
rs1264791	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1268915	0.82[YRI][hapmap]
rs1663142	1.00[AFR][1000 genomes]
rs1953758	0.82[YRI][hapmap]
rs2252475	0.83[YRI][hapmap]
rs2420076	0.82[YRI][hapmap]
rs2440314	0.82[YRI][hapmap]
rs7081522	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116912000-116925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:116919800-116925800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:116923600-116924600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:116923600-116925800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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