Variant report

Variant	rs2252475
Chromosome Location	chr10:116994233-116994234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10749173	0.85[YRI][hapmap]
rs10787565	0.85[YRI][hapmap]
rs10885679	0.83[YRI][hapmap]
rs1264747	0.85[YRI][hapmap]
rs1264749	0.89[AFR][1000 genomes]
rs1264751	0.83[YRI][hapmap]
rs1264753	0.83[YRI][hapmap]
rs1264754	0.83[YRI][hapmap]
rs1264759	0.83[YRI][hapmap]
rs1264780	0.83[YRI][hapmap]
rs1264784	0.83[YRI][hapmap]
rs1264791	0.83[YRI][hapmap]
rs1268915	1.00[YRI][hapmap]
rs1953758	1.00[YRI][hapmap]
rs1999909	1.00[YRI][hapmap]
rs2252493	0.89[AFR][1000 genomes]
rs2253505	0.83[YRI][hapmap];1.00[AFR][1000 genomes]
rs2256693	1.00[AFR][1000 genomes]
rs2264063	0.85[YRI][hapmap]
rs2265929	1.00[YRI][hapmap]
rs2420076	1.00[YRI][hapmap]
rs2440314	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4409743	0.83[YRI][hapmap]
rs621291	1.00[YRI][hapmap]
rs677604	1.00[YRI][hapmap]
rs7081522	1.00[YRI][hapmap]
rs9651421	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116979600-117000200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116981000-117010800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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