Variant report

Variant	rs6585323
Chromosome Location	chr10:117039693-117039694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117038213..117040746-chr10:117045939..117048286,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10749173	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10787565	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs10885679	1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11197158	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264747	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1268915	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1856357	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953758	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999909	1.00[CEU][hapmap]
rs2201364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2253505	0.82[YRI][hapmap]
rs2255916	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2264063	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2265929	1.00[CEU][hapmap]
rs2492983	0.84[EUR][1000 genomes]
rs41314493	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4409743	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4752730	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074552	1.00[CEU][hapmap]
rs7099807	0.87[AMR][1000 genomes]
rs7915481	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116997200-117049800	Weak transcription	Ovary	ovary
2	chr10:117035600-117041800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:117035800-117049800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links