Variant report

Variant	rs41314493
Chromosome Location	chr10:116931235-116931236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10749173	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10885679	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11197158	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1264747	0.84[EUR][1000 genomes]
rs1268915	0.84[EUR][1000 genomes]
rs1856357	0.84[EUR][1000 genomes]
rs1953758	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2201364	0.85[AMR][1000 genomes]
rs2255916	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2264063	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2492983	0.89[EUR][1000 genomes]
rs4409743	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4752730	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57236143	0.89[EUR][1000 genomes]
rs6585323	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7099807	0.89[EUR][1000 genomes]
rs7915481	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
2	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:116926600-116933400	Weak transcription	Fetal Brain Female	brain
4	chr10:116926600-116951400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:116930200-116931600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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