Variant report
| Variant | rs7074552 |
|---|---|
| Chromosome Location | chr10:116909988-116909989 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10749173 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10787565 | 1.00[CEU][hapmap] |
| rs10885679 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11197158 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1264747 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1268915 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1856357 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1953758 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2201364 | 0.85[AMR][1000 genomes] |
| rs2255916 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2264063 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2265929 | 1.00[CEU][hapmap] |
| rs2492983 | 0.89[EUR][1000 genomes] |
| rs41314493 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4409743 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4752730 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs57236143 | 0.89[EUR][1000 genomes] |
| rs6585323 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7099807 | 0.89[EUR][1000 genomes] |
| rs7915481 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3435429 | chr10:116394152-117006347 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv831998 | chr10:116847998-116969618 | Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv869279 | chr10:116884639-117032437 | Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
