Variant report

Variant	esv3426044
Chromosome Location	chr9:94560595-94561197
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94560147..94563596-chr9:94565851..94569196,3	MCF-7	breast:
2	chr9:94559930..94562957-chr9:94564256..94567376,4	K562	blood:
3	chr9:94560025..94562581-chr9:94709584..94711088,2	K562	blood:

Variant related genes	Relation type
ENSG00000169071	chromatin interactions

Extended variants
information (count: 31 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111597085	chr9:94560640-94560641	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs111675755	chr9:94560663-94560664	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs114237636	chr9:94560678-94560679	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs113793450	chr9:94560679-94560680	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs199736851	chr9:94560689-94560690	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs111630991	chr9:94560731-94560732	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs553959293	chr9:94560748-94560749	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs35997310	chr9:94560755-94560756	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs368142411	chr9:94560786-94560787	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs542385774	chr9:94560800-94560801	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs184062593	chr9:94560827-94560828	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs188215430	chr9:94560841-94560842	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs371642497	chr9:94560844-94560845	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs575895316	chr9:94560890-94560891	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs200011979	chr9:94560921-94560922	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs544746704	chr9:94560933-94560934	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs386736279	chr9:94560941-94560942	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs564557694	chr9:94560948-94560949	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs533405754	chr9:94560960-94560961	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs113439526	chr9:94560983-94560984	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs113810760	chr9:94561021-94561022	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs543842720	chr9:94561030-94561031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs565133491	chr9:94561031-94561032	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs532669270	chr9:94561061-94561062	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs4744102	chr9:94561065-94561066	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs559761309	chr9:94561066-94561067	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs530337706	chr9:94561111-94561112	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs548749730	chr9:94561145-94561146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs570372600	chr9:94561175-94561176	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs537730012	chr9:94561182-94561183	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs73513257	chr9:94561190-94561191	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21364760	CNVD
overgrowth syndrome	16570072	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94553200-94561200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:94555400-94562000	Weak transcription	Right Atrium	heart
3	chr9:94558400-94560800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:94558400-94566400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94558600-94561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:94558600-94561000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:94558600-94561000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:94558600-94561400	Weak transcription	Fetal Lung	lung
9	chr9:94558600-94565200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:94558800-94560800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:94558800-94561000	Weak transcription	Fetal Stomach	stomach
12	chr9:94559000-94560600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr9:94559000-94560800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:94559000-94560800	Weak transcription	Colonic Mucosa	Colon
15	chr9:94559000-94560800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:94559000-94560800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:94559000-94560800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:94559000-94560800	Weak transcription	K562	blood
19	chr9:94559000-94560800	Weak transcription	NHEK	skin
20	chr9:94559000-94561000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:94559000-94561000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:94559000-94561000	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:94559000-94561000	Weak transcription	Fetal Intestine Small	intestine
24	chr9:94559000-94561000	Weak transcription	Ovary	ovary
25	chr9:94559000-94561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:94559000-94561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:94559000-94562000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:94559200-94560600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:94559200-94560600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:94559200-94560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:94559200-94560800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr9:94559200-94561000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr9:94559200-94561000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:94560600-94560800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:94560600-94560800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:94560600-94561800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:94560600-94562000	Enhancers	Stomach Mucosa	stomach
38	chr9:94560600-94562200	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr9:94560800-94561000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr9:94560800-94561000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:94560800-94561000	Enhancers	Duodenum Mucosa	Duodenum
42	chr9:94560800-94561000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr9:94560800-94561000	Enhancers	Stomach Smooth Muscle	stomach
44	chr9:94560800-94561000	Enhancers	GM12878-XiMat	blood
45	chr9:94560800-94561000	Enhancers	Hela-S3	cervix
46	chr9:94560800-94561000	Active TSS	K562	blood
47	chr9:94560800-94561000	Enhancers	NHEK	skin
48	chr9:94560800-94561200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr9:94560800-94561200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:94560800-94561400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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