Variant report

Variant	rs542385774
Chromosome Location	chr9:94560800-94560801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94560025..94562581-chr9:94709584..94711088,2	K562	blood:
2	chr9:94559930..94562957-chr9:94564256..94567376,4	K562	blood:
3	chr9:94560147..94563596-chr9:94565851..94569196,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv523940	chr9:94546564-94573753	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv512108	chr9:94557989-94561553	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3363611	chr9:94558506-94561529	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3508366	chr9:94558583-94561480	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv10915	chr9:94558813-94560842	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2433329	chr9:94558840-94561228	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1800344	chr9:94559058-94560914	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1808133	chr9:94559058-94560914	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1809534	chr9:94559058-94560914	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv1819229	chr9:94559058-94560914	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1821295	chr9:94559058-94560914	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3508367	chr9:94559223-94561033	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3508368	chr9:94559223-94561033	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3483812	chr9:94560582-94561090	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3426044	chr9:94560595-94561197	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3388662	chr9:94560607-94560972	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3483811	chr9:94560632-94561062	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3483813	chr9:94560632-94561062	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94553200-94561200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:94555400-94562000	Weak transcription	Right Atrium	heart
3	chr9:94558400-94560800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:94558400-94566400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:94558600-94561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:94558600-94561000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:94558600-94561000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:94558600-94561400	Weak transcription	Fetal Lung	lung
9	chr9:94558600-94565200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:94558800-94560800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:94558800-94561000	Weak transcription	Fetal Stomach	stomach
12	chr9:94559000-94560800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:94559000-94560800	Weak transcription	Colonic Mucosa	Colon
14	chr9:94559000-94560800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:94559000-94560800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:94559000-94560800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:94559000-94560800	Weak transcription	K562	blood
18	chr9:94559000-94560800	Weak transcription	NHEK	skin
19	chr9:94559000-94561000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:94559000-94561000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:94559000-94561000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:94559000-94561000	Weak transcription	Fetal Intestine Small	intestine
23	chr9:94559000-94561000	Weak transcription	Ovary	ovary
24	chr9:94559000-94561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:94559000-94561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:94559000-94562000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:94559200-94560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:94559200-94560800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:94559200-94561000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:94559200-94561000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:94560600-94560800	Enhancers	Primary T cells fromperipheralblood	blood
32	chr9:94560600-94560800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:94560600-94561800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:94560600-94562000	Enhancers	Stomach Mucosa	stomach
35	chr9:94560600-94562200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr9:94560800-94561000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:94560800-94561000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:94560800-94561000	Enhancers	Duodenum Mucosa	Duodenum
39	chr9:94560800-94561000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr9:94560800-94561000	Enhancers	Stomach Smooth Muscle	stomach
41	chr9:94560800-94561000	Enhancers	GM12878-XiMat	blood
42	chr9:94560800-94561000	Enhancers	Hela-S3	cervix
43	chr9:94560800-94561000	Active TSS	K562	blood
44	chr9:94560800-94561000	Enhancers	NHEK	skin
45	chr9:94560800-94561200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr9:94560800-94561200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:94560800-94561400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:94560800-94561400	Flanking Active TSS	Colonic Mucosa	Colon
49	chr9:94560800-94561400	Enhancers	Small Intestine	intestine
50	chr9:94560800-94561600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links