Variant report

Variant	esv3431046
Chromosome Location	chr12:57307435-57309433
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73328680	chr12:57308679-57308680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs10783812	chr12:57308723-57308724	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs557492782	chr12:57308774-57308775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs74093943	chr12:57308788-57308789	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs372765486	chr12:57308820-57308821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs35618546	chr12:57308855-57308856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs147200344	chr12:57308870-57308871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs1909328	chr12:57308936-57308937	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs573926054	chr12:57308956-57308957	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11172056	chr12:57308975-57308976	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs556351374	chr12:57309055-57309056	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184903641	chr12:57309057-57309058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139507896	chr12:57309079-57309080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs564349620	chr12:57309148-57309149	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs4759269	chr12:57309183-57309184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs528470641	chr12:57309233-57309234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs540412421	chr12:57309241-57309242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189453171	chr12:57309285-57309286	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs529307569	chr12:57309315-57309316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs7964087	chr12:57309325-57309326	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs569081823	chr12:57309354-57309355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs558936851	chr12:57309373-57309374	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181041508	chr12:57309405-57309406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs186455589	chr12:57309430-57309431	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	18632612	CNVD
Metanephric adenoma	20802469	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Bladder cancer	21909424	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	17661082	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Autism	20531469	CNVD
Rhabdomyosarcoma	16790082	CNVD
Renal cell carcinoma	18765545	CNVD
Urothelial cell carcinoma	18451213	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21138945	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Leukemia	18628472	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Myelofibrosis	22110671	CNVD
Phyllodes tumor	17334353	CNVD
Glaucoma	21310917	CNVD
Breast cancer	16272173	CNVD
Mental retardation	19951919	CNVD
Glaucoma	21447600	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Developmental delay	21267005	CNVD
12q14 microdeletion syndrome	21267005	CNVD
Developmental delay	19277063	CNVD
Dwarfism	19277063	CNVD
Fibroblasts	20926602	CNVD
Follicular lymphoma	18703704	CNVD
Acute myeloid leukemia	21251322	CNVD
Glycogen storage disease	18421352	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Glioblastoma multiforme	20080666	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	17133270	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57308600-57309200	Enhancers	HepG2	liver
2	chr12:57308800-57311800	Enhancers	Liver	Liver

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