Variant report
| Variant | rs1909328 |
|---|---|
| Chromosome Location | chr12:57308936-57308937 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10876943 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11172033 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1846398 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2888106 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2888107 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2888108 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4477473 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4759036 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4759041 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55812315 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61939604 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7955918 | 0.83[EUR][1000 genomes] |
| rs7956391 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7959253 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7959654 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7959725 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7960137 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7961602 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7967940 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7972591 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7979655 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs840161 | 0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9668259 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| 2 | nsv899107 | chr12:57293436-57321212 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3431046 | chr12:57307435-57309433 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:57308600-57309200 | Enhancers | HepG2 | liver |
| 2 | chr12:57308800-57311800 | Enhancers | Liver | Liver |
