Variant report

Variant	esv3432845
Chromosome Location	chrX:93963606-94052623
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:172)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:172 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chrX:93977724-93977953	K562	blood:	n/a	n/a
2	CEBPB	chrX:94045568-94045662	IMR90	lung:	n/a	n/a
3	CEBPB	chrX:94045584-94045703	A549	lung:	n/a	n/a
4	CEBPB	chrX:93979292-93979412	H1-hESC	embryonic stem cell:	n/a	n/a
5	CEBPB	chrX:93972580-93972770	HepG2	liver:	n/a	n/a
6	CTCF	chrX:94002507-94002541	LNCaP	prostate:	n/a	n/a
7	CTCF	chrX:94041792-94041844	GM10248	blood:	n/a	n/a
8	CTCF	chrX:94006445-94006977	SK-N-SH	brain:	n/a	n/a
9	CTCF	chrX:93976107-93976155	LNCaP	prostate:	n/a	n/a
10	CTCF	chrX:94006740-94006890	HEK293	kidney:	n/a	n/a
11	CTCF	chrX:94006620-94006770	GM12869	blood:	n/a	n/a
12	CTCF	chrX:94010948-94011079	GM20000	blood:	n/a	n/a
13	CTCF	chrX:94006600-94006750	GM06990	blood:	n/a	n/a
14	CTCF	chrX:94006740-94006890	HepG2	liver:	n/a	n/a
15	CTCF	chrX:94042513-94042553	GM20000	blood:	n/a	n/a
16	CTCF	chrX:94006691-94006823	HepG2	liver:	n/a	n/a
17	CTCF	chrX:94027420-94027570	GM06990	blood:	n/a	n/a
18	CTCF	chrX:94006724-94006838	MCF-7	breast:	n/a	n/a
19	CTCF	chrX:94032276-94032336	GM10248	blood:	n/a	n/a
20	CTCF	chrX:94035995-94036079	LNCaP	prostate:	n/a	n/a
21	CTCF	chrX:94026440-94026590	GM06990	blood:	n/a	n/a
22	CTCF	chrX:94024293-94024455	LNCaP	prostate:	n/a	chrX:94024402-94024423
23	CTCF	chrX:94012097-94012141	ProgFib	skin:	n/a	n/a
24	CTCF	chrX:94048817-94048891	GM10266	blood:	n/a	n/a
25	CTCF	chrX:94006702-94006848	HepG2	liver:	n/a	n/a
26	CTCF	chrX:93999141-93999179	LNCaP	prostate:	n/a	n/a
27	CTCF	chrX:93994366-93994389	Medullo	brain:	n/a	n/a
28	CTCF	chrX:94032989-94033020	HepG2	liver:	n/a	n/a
29	CTCF	chrX:94004486-94004553	GM13976	blood:	n/a	n/a
30	CTCF	chrX:94006640-94006790	GM12867	blood:	n/a	n/a
31	CTCF	chrX:94006635-94006856	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chrX:93983855-93983916	ProgFib	skin:	n/a	n/a
33	CTCF	chrX:93988598-93988676	LNCaP	prostate:	n/a	n/a
34	CTCF	chrX:94006640-94006790	BE2_C	brain:	n/a	n/a
35	CTCF	chrX:94006680-94006805	SK-N-SH_RA	brain:	n/a	n/a
36	CTCF	chrX:94006620-94006770	MCF-7	breast:	n/a	n/a
37	CTCF	chrX:94006710-94006849	GM12878	blood:	n/a	n/a
38	CTCF	chrX:94006691-94006829	Medullo	brain:	n/a	n/a
39	CTCF	chrX:93971217-93971304	Fibrobl	skin:	n/a	n/a
40	CTCF	chrX:94006540-94006690	HMF	breast:	n/a	n/a
41	CTCF	chrX:94006740-94006795	LNCaP	prostate:	n/a	n/a
42	CTCF	chrX:94006680-94006830	GM12873	blood:	n/a	n/a
43	CTCF	chrX:94037404-94037471	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chrX:93995386-93995438	LNCaP	prostate:	n/a	n/a
45	CTCF	chrX:94006640-94006790	GM06990	blood:	n/a	n/a
46	CTCF	chrX:94006634-94006852	SK-N-SH_RA	brain:	n/a	n/a
47	CTCF	chrX:94024297-94024541	GM12878	blood:	n/a	chrX:94024402-94024423
48	CTCF	chrX:94024412-94024440	Lung_OC	lung:	n/a	n/a
49	CTCF	chrX:93965472-93965557	GM20000	blood:	n/a	n/a
50	CTCF	chrX:94006680-94006830	HMF	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:94006367..94007161-chrX:94331637..94332179,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NAP1L3-7	chrX:94031738-94032566	NONHSAT137843

No data

Variant related genes	Relation type
CCNB1IP1P3	TF binding region

Extended variants
information (count: 1065 )
Associated
traits (count: 35 )

Variant overlapped rSNPs/rCNVs (count:1065 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144233144	chrX:93963636-93963637	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148384590	chrX:93963779-93963780	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs369944127	chrX:93963811-93963812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141568794	chrX:93963882-93963883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs79070588	chrX:93963993-93963994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs3120913	chrX:93964085-93964086	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs557185881	chrX:93964090-93964091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186542306	chrX:93964152-93964153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188789797	chrX:93964270-93964271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181544831	chrX:93964400-93964401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs186149424	chrX:93964438-93964439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190920366	chrX:93964493-93964494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs61455759	chrX:93964625-93964626	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536471533	chrX:93964663-93964664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571025117	chrX:93964731-93964732	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs573906979	chrX:93964783-93964784	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200833882	chrX:93964841-93964842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184060243	chrX:93965079-93965080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs58889175	chrX:93965095-93965096	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs185781330	chrX:93965229-93965230	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12556009	chrX:93965281-93965282	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs140106361	chrX:93965304-93965305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs145505743	chrX:93965346-93965347	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111490173	chrX:93965429-93965430	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs374956873	chrX:93965460-93965461	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs113192729	chrX:93965505-93965506	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs144881280	chrX:93965594-93965595	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs190982861	chrX:93965734-93965735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs28850940	chrX:93965791-93965792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7892627	chrX:93965902-93965903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182749522	chrX:93966027-93966028	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186917261	chrX:93966028-93966029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191754351	chrX:93966246-93966247	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182790957	chrX:93966311-93966312	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368799111	chrX:93966332-93966333	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs187397133	chrX:93966366-93966367	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs1953810	chrX:93966374-93966375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs192344307	chrX:93966398-93966399	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185651070	chrX:93966538-93966539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs5990676	chrX:93966546-93966547	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188967580	chrX:93966850-93966851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs145407124	chrX:93966915-93966916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567498281	chrX:93966938-93966939	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112279469	chrX:93966992-93966993	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192649964	chrX:93966998-93966999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184485504	chrX:93967055-93967056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546945006	chrX:93967100-93967101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs202106209	chrX:93967111-93967112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111951776	chrX:93967113-93967114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs188537594	chrX:93967343-93967344	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:35)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Autism	22495311	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
Mental retardation	17339581	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:93959800-93984800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:93961200-93969800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chrX:93961600-93964000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chrX:93961600-93964600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chrX:93961600-93965800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chrX:93961600-93968400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chrX:93961600-93969800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chrX:93961800-93964400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chrX:93961800-93965000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chrX:93963200-93963800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chrX:93963600-93964800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chrX:93963800-93965400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chrX:93964800-93968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chrX:93965000-93966400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chrX:93965400-93965600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chrX:93966400-93969600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chrX:93966800-93968400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chrX:93967000-93968000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chrX:93967000-93969400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chrX:93968000-93969400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chrX:93969600-93970000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chrX:93969800-93970600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chrX:93970400-93971000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chrX:93970600-93971000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chrX:93971000-93972000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chrX:93972000-93972200	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chrX:93977600-93977800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chrX:93978600-93979600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
29	chrX:93978600-93979600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chrX:93978800-93979000	Enhancers	H9 Cell Line	embryonic stem cell
31	chrX:93978800-93979000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chrX:93979000-93995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chrX:93979000-93997600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chrX:93979600-93980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chrX:93980800-93984800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chrX:93983000-93983400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chrX:93988000-93988400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chrX:93988600-93990200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chrX:93995600-93995800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chrX:93995800-93996200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chrX:93996200-93997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chrX:93997000-93998200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chrX:93997400-94001000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chrX:93997600-93997800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chrX:93997600-93998800	Enhancers	H9 Cell Line	embryonic stem cell
46	chrX:93997600-93999200	Enhancers	Primary hematopoietic stem cells	blood
47	chrX:93997600-93999200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chrX:93997600-94000400	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chrX:93997600-94000800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chrX:93997600-94001800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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