Variant report

Variant	esv3433843
Chromosome Location	chr10:25240746-25242744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:25240339-25240877	K562	blood:	n/a	n/a
2	ATF1	chr10:25240407-25241004	K562	blood:	n/a	n/a
3	ATF2	chr10:25241808-25242261	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr10:25241844-25242330	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr10:25240622-25242272	GM12878	blood:	n/a	chr10:25241832-25241848 chr10:25241803-25241819 chr10:25241723-25241739 chr10:25241792-25241808
6	BHLHE40	chr10:25240408-25242646	K562	blood:	n/a	chr10:25241832-25241848 chr10:25241803-25241819 chr10:25241723-25241739 chr10:25241792-25241808
7	CBX3	chr10:25240478-25241030	K562	blood:	n/a	n/a
8	CCNT2	chr10:25240356-25242089	K562	blood:	n/a	chr10:25241699-25241708 chr10:25241836-25241845 chr10:25241284-25241293
9	CEBPB	chr10:25241822-25241934	H1-hESC	embryonic stem cell:	n/a	n/a
10	CEBPB	chr10:25241099-25241469	H1-hESC	embryonic stem cell:	n/a	n/a
11	CEBPB	chr10:25241107-25241384	IMR90	lung:	n/a	n/a
12	CEBPB	chr10:25240678-25240878	K562	blood:	n/a	n/a
13	CEBPB	chr10:25241215-25241415	K562	blood:	n/a	n/a
14	CEBPB	chr10:25241100-25241545	Hela-S3	cervix:	n/a	n/a
15	CHD1	chr10:25241037-25241874	GM12878	blood:	n/a	chr10:25241723-25241733 chr10:25241285-25241295
16	CHD1	chr10:25241898-25242253	H1-hESC	embryonic stem cell:	n/a	n/a
17	CHD2	chr10:25241080-25242215	Hela-S3	cervix:	n/a	chr10:25241723-25241733 chr10:25241285-25241295
18	CHD2	chr10:25240555-25242218	K562	blood:	n/a	chr10:25241723-25241733 chr10:25241285-25241295
19	CHD2	chr10:25241794-25242338	H1-hESC	embryonic stem cell:	n/a	n/a
20	CHD2	chr10:25240570-25242731	GM12878	blood:	n/a	chr10:25241723-25241733 chr10:25241285-25241295
21	CHD2	chr10:25240637-25241573	H1-hESC	embryonic stem cell:	n/a	chr10:25241285-25241295
22	CREB1	chr10:25241313-25241698	A549	lung:	n/a	n/a
23	CREB1	chr10:25241700-25241977	A549	lung:	n/a	n/a
24	CTBP2	chr10:25239941-25242417	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr10:25241800-25241950	HPAF	blood vessel:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
26	CTCF	chr10:25241328-25241997	IMR90	lung:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
27	CTCF	chr10:25241340-25241490	HEEpiC	esophagus:	n/a	n/a
28	CTCF	chr10:25241400-25241550	HA-sp	spinal cord:	n/a	n/a
29	CTCF	chr10:25241360-25241510	SK-N-SH_RA	brain:	n/a	n/a
30	CTCF	chr10:25241800-25241950	AG04449	skin:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
31	CTCF	chr10:25241742-25241909	GM20000	blood:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
32	CTCF	chr10:25241735-25241918	ProgFib	skin:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
33	CTCF	chr10:25241422-25241570	MCF-7	breast:	n/a	n/a
34	CTCF	chr10:25241684-25241959	GM12892	blood:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
35	CTCF	chr10:25241420-25241570	HRE	kidney:	n/a	n/a
36	CTCF	chr10:25241380-25241530	BJ	skin:	n/a	n/a
37	CTCF	chr10:25241460-25241610	A549	lung:	n/a	n/a
38	CTCF	chr10:25241460-25241610	NHDF-neo	bronchial:	n/a	n/a
39	CTCF	chr10:25241712-25241900	Kidney_OC	kidney:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
40	CTCF	chr10:25241300-25241450	BE2_C	brain:	n/a	n/a
41	CTCF	chr10:25241713-25241976	GM10248	blood:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
42	CTCF	chr10:25241817-25241844	LNCaP	prostate:	n/a	n/a
43	CTCF	chr10:25241437-25241576	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr10:25241692-25241963	GM19238	blood:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
45	CTCF	chr10:25241720-25241870	A549	lung:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
46	CTCF	chr10:25241370-25241536	K562	blood:	n/a	n/a
47	CTCF	chr10:25241380-25241530	HRE	kidney:	n/a	n/a
48	CTCF	chr10:25241701-25241947	Pancreas_OC	pancreas:	n/a	chr10:25241805-25241823 chr10:25241806-25241822 chr10:25241807-25241820
49	CTCF	chr10:25241420-25241570	HRPEpiC	eye:	n/a	n/a
50	CTCF	chr10:25241878-25241904	HUVEC	blood vessel:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:25241427-25241477	AG09319	gingival:	n/a
2	chr10:25241462-25241512	HMEC	breast:	n/a
3	chr10:25241462-25241512	U87	brain:	n/a
4	chr10:25241885-25241935	ProgFib	skin:	n/a
5	chr10:25241883-25241933	GM12878	blood:	n/a
6	chr10:25241427-25241477	PrEC	prostate:	n/a
7	chr10:25241462-25241512	AG09319	gingival:	n/a
8	chr10:25241462-25241512	ovcar-3	ovarian:	n/a
9	chr10:25241883-25241933	HUVEC	blood vessel:	n/a
10	chr10:25242031-25242081	SK-N-SH_RA	brain:	n/a
11	chr10:25241885-25241935	HepG2	liver:	n/a
12	chr10:25241462-25241512	AoSMC	blood vessel:	n/a
13	chr10:25241885-25241935	PFSK-1	brain:	n/a
14	chr10:25242031-25242081	GM19239	blood:	n/a
15	chr10:25241427-25241477	CMK	blood:	n/a
16	chr10:25241885-25241935	HRCEpiC	kidney:	n/a
17	chr10:25241427-25241477	RPTEC	kidney:	n/a
18	chr10:25241260-25241310	IMR90	lung:	fetal
19	chr10:25241427-25241477	NHDF-neo	bronchial:	n/a
20	chr10:25242031-25242081	GM12891	blood:	n/a
21	chr10:25241427-25241477	NB4	blood:	n/a
22	chr10:25241462-25241512	PrEC	prostate:	n/a
23	chr10:25241260-25241310	Hepatocyte	liver:	n/a
24	chr10:25242031-25242081	NH-A	brain:	n/a
25	chr10:25242031-25242081	HCF	heart:	n/a
26	chr10:25242031-25242081	HCM	heart:	n/a
27	chr10:25241885-25241935	HPAEpiC	pulmonary alveolar:	n/a
28	chr10:25241883-25241933	GM06990	blood:	n/a
29	chr10:25241462-25241512	ProgFib	skin:	n/a
30	chr10:25241885-25241935	BJ	skin:	n/a
31	chr10:25241462-25241512	GM12878	blood:	n/a
32	chr10:25241462-25241512	A549	lung:	n/a
33	chr10:25241427-25241477	SAEC	small airway:	n/a
34	chr10:25241260-25241310	AoSMC	blood vessel:	n/a
35	chr10:25241260-25241310	HEK293	kidney:	embryo
36	chr10:25241427-25241477	Hela-S3	cervix:	n/a
37	chr10:25242031-25242081	K562	blood:	n/a
38	chr10:25241427-25241477	HCM	heart:	n/a
39	chr10:25241462-25241512	Caco-2	colon:	n/a
40	chr10:25241462-25241512	AG04450	lung:	fetal
41	chr10:25242031-25242081	HEEpiC	esophagus:	n/a
42	chr10:25241885-25241935	NH-A	brain:	n/a
43	chr10:25241885-25241935	HCF	heart:	n/a
44	chr10:25241427-25241477	HNPCEpiC	eye:	n/a
45	chr10:25241260-25241310	Hela-S3	cervix:	n/a
46	chr10:25242031-25242081	HepG2	liver:	n/a
47	chr10:25241260-25241310	ECC-1	luminal epithelium:	n/a
48	chr10:25241462-25241512	HAEpiC	amniotic membrane:	n/a
49	chr10:25241427-25241477	PANC-1	pancreas:	n/a
50	chr10:25241885-25241935	HNPCEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:25242420..25244557-chr10:25246178..25248429,2	MCF-7	breast:
2	chr10:25010212..25016288-chr10:25239162..25243925,7	K562	blood:
3	chr10:25009845..25014059-chr10:25240930..25243462,5	MCF-7	breast:
4	chr10:25010748..25013945-chr10:25238648..25242767,8	MCF-7	breast:
5	chr10:25239754..25241501-chr10:25279969..25281607,2	K562	blood:
6	chr10:25239628..25245194-chr10:25304841..25307327,7	K562	blood:
7	chr10:25154526..25157379-chr10:25242039..25244548,2	K562	blood:
8	chr10:25009082..25014020-chr10:25238727..25242865,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THNSL1-4	chr10:25242170-25242442	ENSG00000273107.1
2	lnc-THNSL1-4	chr10:25241978-25242206	NONHSAT011795
3	lnc-THNSL1-4	chr10:25241300-25241377	NONHSAT011795

Variant related genes	Relation type
ENSG00000273107	TF binding region
PRTFDC1	TF binding region
ENSG00000273107	CpG island
PRTFDC1	CpG island
ENSG00000228667	chromatin interactions
ENSG00000185875	chromatin interactions
ENSG00000151023	chromatin interactions
ENSG00000107863	chromatin interactions

Extended variants
information (count: 70 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567316562	chr10:25240815-25240816	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs536230235	chr10:25240839-25240840	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs7083691	chr10:25240876-25240877	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs566458138	chr10:25240888-25240889	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs185939226	chr10:25240957-25240958	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs190658285	chr10:25240986-25240987	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs558485607	chr10:25240994-25240995	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs11014322	chr10:25241030-25241031	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs537798096	chr10:25241058-25241059	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs274315	chr10:25241080-25241081	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs573732985	chr10:25241093-25241094	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs377286944	chr10:25241110-25241111	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs182579031	chr10:25241120-25241121	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs559671764	chr10:25241135-25241136	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs274314	chr10:25241150-25241151	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs545443031	chr10:25241153-25241154	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs549914405	chr10:25241280-25241281	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs565518068	chr10:25241282-25241283	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs143885621	chr10:25241305-25241306	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
20	rs369636319	chr10:25241326-25241327	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
21	rs114265006	chr10:25241328-25241329	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
22	rs561548044	chr10:25241367-25241368	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
23	rs530382122	chr10:25241377-25241378	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
24	rs372794666	chr10:25241430-25241431	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs376015295	chr10:25241435-25241436	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs546297480	chr10:25241447-25241448	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs138349148	chr10:25241467-25241468	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs149187045	chr10:25241489-25241490	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs143356584	chr10:25241502-25241503	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs540514910	chr10:25241519-25241520	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs191331757	chr10:25241520-25241521	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs537635697	chr10:25241553-25241554	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs554310678	chr10:25241569-25241570	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs568035435	chr10:25241580-25241581	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs373681885	chr10:25241585-25241586	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs375693190	chr10:25241591-25241592	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs534047416	chr10:25241596-25241597	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs553101217	chr10:25241627-25241628	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs573181023	chr10:25241643-25241644	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs182733535	chr10:25241652-25241653	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs34712055	chr10:25241659-25241660	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs111731474	chr10:25241675-25241676	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs569895045	chr10:25241700-25241701	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
44	rs575941156	chr10:25241756-25241757	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs544834066	chr10:25241771-25241772	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs111537422	chr10:25241810-25241811	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
47	rs561435373	chr10:25241828-25241829	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs530328449	chr10:25241844-25241845	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
49	rs111618508	chr10:25241853-25241854	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs187758139	chr10:25241878-25241879	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Acute lymphoblastic leukemia	22237106	CNVD

Chromatin state (count:464 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25236200-25241000	Weak transcription	Thymus	Thymus
2	chr10:25237000-25240800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr10:25237000-25241000	Weak transcription	Ovary	ovary
4	chr10:25237200-25240800	Weak transcription	HMEC	breast
5	chr10:25237400-25240800	Weak transcription	NHEK	skin
6	chr10:25237400-25241400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:25237800-25241200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:25239400-25241000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:25239800-25240800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:25239800-25240800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:25239800-25240800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:25239800-25240800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:25239800-25240800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:25239800-25240800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:25239800-25241000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr10:25240000-25240800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:25240000-25240800	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:25240000-25241000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr10:25240000-25241000	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr10:25240000-25241000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:25240000-25241000	Flanking Active TSS	Fetal Brain Male	brain
22	chr10:25240000-25241000	Flanking Active TSS	Fetal Brain Female	brain
23	chr10:25240000-25241000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr10:25240000-25241000	Enhancers	Right Ventricle	heart
25	chr10:25240000-25241000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:25240000-25241200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:25240000-25241200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:25240000-25241200	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr10:25240000-25241200	Enhancers	Spleen	Spleen
30	chr10:25240000-25241400	Enhancers	Fetal Heart	heart
31	chr10:25240200-25240800	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr10:25240200-25240800	Flanking Active TSS	Fetal Kidney	kidney
33	chr10:25240200-25241000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
34	chr10:25240200-25241000	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr10:25240200-25241000	Weak transcription	Lung	lung
36	chr10:25240200-25243000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:25240400-25240800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:25240400-25240800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:25240400-25240800	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr10:25240400-25240800	Enhancers	Colonic Mucosa	Colon
41	chr10:25240400-25240800	Enhancers	Colon Smooth Muscle	Colon
42	chr10:25240400-25240800	Flanking Active TSS	Fetal Lung	lung
43	chr10:25240400-25241000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr10:25240400-25241000	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr10:25240400-25241000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr10:25240400-25241000	Flanking Active TSS	A549	lung
47	chr10:25240400-25241000	Flanking Active TSS	K562	blood
48	chr10:25240400-25242600	Active TSS	H9 Cell Line	embryonic stem cell
49	chr10:25240400-25242600	Flanking Active TSS	Dnd41	blood
50	chr10:25240600-25240800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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