Variant report
| Variant | esv3434521 |
|---|---|
| Chromosome Location | chr15:56359728-56362273 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RFX7-2 | chr15:56359594-56359975 | l_1162_chr15:56293600-56416163_liver |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CD24P2 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs12914260 | chr15:56359777-56359778 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs532737123 | chr15:56359778-56359779 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs546201391 | chr15:56359809-56359810 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs566519247 | chr15:56359810-56359811 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs547797011 | chr15:56359813-56359814 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs528981376 | chr15:56359815-56359816 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs183757061 | chr15:56359840-56359841 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs568995136 | chr15:56359848-56359849 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs561225107 | chr15:56359941-56359942 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs535139545 | chr15:56360377-56360378 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 11 | rs548659138 | chr15:56360380-56360381 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Variant related diseases (count:58)
| Disease | PMID | Source |
|---|---|---|
| Ewing''s sarcoma | 21437220 | CNVD |
| Schizophrenia | 19415332 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Autism | 22495311 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| cataract | 16735990 | CNVD |
| Cancer | 21637783 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
| Schizophrenia | 21324950 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Disease | 21824424 | CNVD |
| Melanoma | 18172304 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Gastric cancer | 17167181 | CNVD |
| Neuroblastoma | 19435921 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Gastrointestinal stromal cancer | 20470368 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Cancer | 21129771 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Abnormal phenotypes | 18644119 | CNVD |
| Cancer | 16751803 | CNVD |
| Esophageal adenocarcinoma | 18820669 | CNVD |
| Gastrointestinal stromal cancer | 20818650 | CNVD |
| Acute monocytic leukemia | 16498392 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Gastric adenocarcinoma | 19115996 | CNVD |
| Congenital diaphragmatic hernia | 21341218 | CNVD |
| Holoprosencephaly | 21359414 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
