Variant report

Variant	rs12914260
Chromosome Location	chr15:56359777-56359778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RFX7-2	chr15:56359594-56359975	l_1162_chr15:56293600-56416163_liver

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11629483	0.82[EUR][1000 genomes]
rs11631191	0.82[EUR][1000 genomes]
rs12442656	0.88[ASN][1000 genomes]
rs12905899	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907263	0.85[EUR][1000 genomes]
rs12911094	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12911427	0.87[EUR][1000 genomes]
rs1372753	0.80[EUR][1000 genomes]
rs1442640	0.87[EUR][1000 genomes]
rs2119937	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34044869	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34144128	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34224072	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34386737	0.85[EUR][1000 genomes]
rs35082998	0.90[EUR][1000 genomes]
rs35722267	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35749329	0.82[EUR][1000 genomes]
rs35972806	0.80[EUR][1000 genomes]
rs4310791	0.84[EUR][1000 genomes]
rs4310792	0.84[EUR][1000 genomes]
rs4774231	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4774232	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4774847	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59432349	0.82[EUR][1000 genomes]
rs62044082	0.82[EUR][1000 genomes]
rs62044110	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62044111	0.89[EUR][1000 genomes]
rs6493835	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7165270	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7168319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7174823	0.81[EUR][1000 genomes]
rs7175745	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7496025	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8024031	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8028353	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8029097	0.87[ASN][1000 genomes]
rs8029114	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8032242	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8033653	0.90[EUR][1000 genomes]
rs9672886	0.84[EUR][1000 genomes]
rs9672928	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3434521	chr15:56359728-56362273	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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