Variant report

Variant	esv3436027
Chromosome Location	chr6:33754374-33758772
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:762)
CpG islands
(count:978)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:762 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:33756851-33757291	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:33756893-33757185	K562	blood:	n/a	n/a
3	ATF1	chr6:33758459-33758502	K562	blood:	n/a	n/a
4	ATF2	chr6:33756768-33757258	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr6:33756744-33757210	GM12878	blood:	n/a	n/a
6	ATF2	chr6:33756765-33757237	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr6:33756884-33757231	GM12878	blood:	n/a	n/a
8	ATF3	chr6:33756603-33757107	K562	blood:	n/a	n/a
9	BACH1	chr6:33756597-33756629	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr6:33757058-33757455	K562	blood:	n/a	n/a
11	BATF	chr6:33756707-33757125	GM12878	blood:	n/a	n/a
12	BCLAF1	chr6:33756524-33757289	GM12878	blood:	n/a	chr6:33756961-33756970 chr6:33756958-33756967
13	BCLAF1	chr6:33756720-33757246	GM12878	blood:	n/a	chr6:33756961-33756970 chr6:33756958-33756967
14	BCLAF1	chr6:33756727-33757227	K562	blood:	n/a	chr6:33756961-33756970 chr6:33756958-33756967
15	BCLAF1	chr6:33756695-33757243	K562	blood:	n/a	chr6:33756961-33756970 chr6:33756958-33756967
16	BCLAF1	chr6:33755791-33756372	GM12878	blood:	n/a	chr6:33756028-33756037 chr6:33756062-33756071
17	BHLHE40	chr6:33755790-33756195	GM12878	blood:	n/a	n/a
18	BHLHE40	chr6:33756774-33757218	GM12878	blood:	n/a	n/a
19	BHLHE40	chr6:33755816-33756017	K562	blood:	n/a	n/a
20	BHLHE40	chr6:33756786-33757171	HepG2	liver:	n/a	n/a
21	BHLHE40	chr6:33756823-33757353	K562	blood:	n/a	n/a
22	BRCA1	chr6:33756723-33757052	HepG2	liver:	n/a	n/a
23	BRCA1	chr6:33756878-33757180	H1-hESC	embryonic stem cell:	n/a	n/a
24	BRCA1	chr6:33756918-33757223	Hela-S3	cervix:	n/a	n/a
25	CBX3	chr6:33756675-33757498	K562	blood:	n/a	n/a
26	CBX3	chr6:33756867-33757252	K562	blood:	n/a	n/a
27	CCNT2	chr6:33756003-33757143	K562	blood:	n/a	n/a
28	CEBPB	chr6:33756838-33757344	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chr6:33756846-33757373	K562	blood:	n/a	n/a
30	CEBPD	chr6:33756662-33757210	K562	blood:	n/a	n/a
31	CEBPD	chr6:33756784-33757134	HepG2	liver:	n/a	n/a
32	CEBPD	chr6:33756584-33757119	HepG2	liver:	n/a	n/a
33	CHD1	chr6:33756488-33756896	H1-hESC	embryonic stem cell:	n/a	n/a
34	CHD1	chr6:33755936-33756086	GM12878	blood:	n/a	n/a
35	CHD1	chr6:33753489-33757327	IMR90	lung:	n/a	n/a
36	CHD1	chr6:33756289-33757232	GM12878	blood:	n/a	n/a
37	CHD2	chr6:33756698-33757115	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD2	chr6:33755939-33756219	Hela-S3	cervix:	n/a	n/a
39	CHD2	chr6:33755606-33756212	GM12878	blood:	n/a	n/a
40	CHD2	chr6:33756020-33756220	HepG2	liver:	n/a	n/a
41	CHD2	chr6:33756586-33757108	K562	blood:	n/a	n/a
42	CHD2	chr6:33756680-33757228	GM12878	blood:	n/a	n/a
43	CHD2	chr6:33756722-33757425	HepG2	liver:	n/a	n/a
44	CHD2	chr6:33756547-33757147	Hela-S3	cervix:	n/a	n/a
45	CREB1	chr6:33756523-33757343	H1-hESC	embryonic stem cell:	n/a	n/a
46	CREB1	chr6:33756815-33757101	A549	lung:	n/a	n/a
47	CREB1	chr6:33756588-33757302	H1-hESC	embryonic stem cell:	n/a	n/a
48	CREB1	chr6:33755950-33756288	A549	lung:	n/a	n/a
49	CREB1	chr6:33756550-33757443	HepG2	liver:	n/a	n/a
50	CREB1	chr6:33755954-33757542	K562	blood:	n/a	n/a

(count:978 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:33757359-33757409	NT2-D1	testis:	n/a
2	chr6:33755658-33755708	K562	blood:	n/a
3	chr6:33757359-33757409	NT2-D1	testis:	n/a
4	chr6:33755658-33755708	K562	blood:	n/a
5	chr6:33755658-33755708	AG10803	skin:	n/a
6	chr6:33757054-33757104	AG09309	skin:	n/a
7	chr6:33756905-33756955	K562	blood:	n/a
8	chr6:33756905-33756955	HNPCEpiC	eye:	n/a
9	chr6:33757040-33757090	NHDF-neo	bronchial:	n/a
10	chr6:33756180-33756230	HUVEC	blood vessel:	n/a
11	chr6:33756678-33756728	U87	brain:	n/a
12	chr6:33757359-33757409	ProgFib	skin:	n/a
13	chr6:33754833-33754883	ProgFib	skin:	n/a
14	chr6:33756180-33756230	HAEpiC	amniotic membrane:	n/a
15	chr6:33754833-33754883	PFSK-1	brain:	n/a
16	chr6:33757062-33757112	PFSK-1	brain:	n/a
17	chr6:33757077-33757127	GM12892	blood:	n/a
18	chr6:33757062-33757112	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:33754751-33754801	NH-A	brain:	n/a
20	chr6:33757054-33757104	MCF-7	breast:	n/a
21	chr6:33754751-33754801	BE2_C	brain:	n/a
22	chr6:33756902-33756952	HCT-116	colon:	n/a
23	chr6:33757854-33757904	SK-N-SH	brain:	n/a
24	chr6:33757653-33757703	GM12892	blood:	n/a
25	chr6:33754751-33754801	SKMC	muscle:	n/a
26	chr6:33756678-33756728	GM12891	blood:	n/a
27	chr6:33757653-33757703	HCF	heart:	n/a
28	chr6:33757040-33757090	HPAEpiC	pulmonary alveolar:	n/a
29	chr6:33754833-33754883	NH-A	brain:	n/a
30	chr6:33756905-33756955	HIPEpiC	eye:	n/a
31	chr6:33756082-33756132	PANC-1	pancreas:	n/a
32	chr6:33756905-33756955	GM12878	blood:	n/a
33	chr6:33756905-33756955	HMEC	breast:	n/a
34	chr6:33757359-33757409	ovcar-3	ovarian:	n/a
35	chr6:33754751-33754801	PFSK-1	brain:	n/a
36	chr6:33757062-33757112	HNPCEpiC	eye:	n/a
37	chr6:33757077-33757127	AG09309	skin:	n/a
38	chr6:33756082-33756132	HUVEC	blood vessel:	n/a
39	chr6:33757040-33757090	K562	blood:	n/a
40	chr6:33757062-33757112	GM06990	blood:	n/a
41	chr6:33756905-33756955	HAEpiC	amniotic membrane:	n/a
42	chr6:33756180-33756230	RPTEC	kidney:	n/a
43	chr6:33757054-33757104	SK-N-SH_RA	brain:	n/a
44	chr6:33757062-33757112	MCF-7	breast:	n/a
45	chr6:33754833-33754883	NHBE	bronchial:	n/a
46	chr6:33756905-33756955	HCM	heart:	n/a
47	chr6:33756180-33756230	HPAEpiC	pulmonary alveolar:	n/a
48	chr6:33757054-33757104	Jurkat	blood:	n/a
49	chr6:33757054-33757104	HNPCEpiC	eye:	n/a
50	chr6:33755658-33755708	HCF	heart:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33758412..33760501-chr6:33767524..33770306,2	MCF-7	breast:
2	chr17:48943386..48944014-chr6:33755667..33756340,2	Hela-S3	cervix:
3	chr6:33550386..33552584-chr6:33755194..33756833,2	MCF-7	breast:
4	chr6:33758565..33760342-chr6:33771227..33773397,2	MCF-7	breast:
5	chr6:33743352..33745913-chr6:33755354..33756938,3	MCF-7	breast:
6	chr6:33743776..33747465-chr6:33751783..33755243,5	MCF-7	breast:
7	chr6:33756927..33758602-chr6:33764987..33767346,2	MCF-7	breast:
8	chr6:33677680..33679812-chr6:33755384..33758328,2	MCF-7	breast:
9	chr6:33678014..33680671-chr6:33755515..33757218,2	K562	blood:
10	chr6:33755468..33757115-chr6:34205033..34207556,2	MCF-7	breast:
11	chr6:33754851..33757425-chr6:33862551..33864997,3	MCF-7	breast:
12	chr6:33755622..33756350-chr7:25164616..25165317,2	Hela-S3	cervix:
13	chr6:33677771..33685795-chr6:33753004..33758704,10	MCF-7	breast:
14	chr6:33752857..33754428-chr6:33763521..33765942,2	MCF-7	breast:

No data

Variant related genes	Relation type
LEMD2	TF binding region
LEMD2	CpG island
ENSG00000137309	chromatin interactions
ENSG00000249346	chromatin interactions
ENSG00000172115	chromatin interactions
ENSG00000161904	chromatin interactions
ENSG00000204188	chromatin interactions
ENSG00000137288	chromatin interactions
ENSG00000141232	chromatin interactions
ENSG00000096395	chromatin interactions

Extended variants
information (count: 183 )
Associated
traits (count: 106 )

Variant overlapped rSNPs/rCNVs (count:183 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564747630	chr6:33754381-33754382	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs567462537	chr6:33754395-33754396	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs9394167	chr6:33754396-33754397	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs76238687	chr6:33754405-33754406	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs144605130	chr6:33754423-33754424	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs370358265	chr6:33754462-33754463	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs529943223	chr6:33754467-33754468	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs546901911	chr6:33754479-33754480	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs374372020	chr6:33754481-33754482	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs201943593	chr6:33754490-33754491	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs367828780	chr6:33754495-33754496	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs199962487	chr6:33754500-33754501	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs374591544	chr6:33754515-33754516	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs368591066	chr6:33754517-33754518	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs78434310	chr6:33754577-33754578	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs4711351	chr6:33754592-33754593	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs561358256	chr6:33754611-33754612	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs531849945	chr6:33754613-33754614	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs138732144	chr6:33754735-33754736	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs375181086	chr6:33754739-33754740	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs539281972	chr6:33754766-33754767	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs547759797	chr6:33754767-33754768	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs4713681	chr6:33754817-33754818	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs188587993	chr6:33754821-33754822	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs554186245	chr6:33754832-33754833	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs193274394	chr6:33754845-33754846	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs565921230	chr6:33754850-33754851	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs116407473	chr6:33754878-33754879	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs536753026	chr6:33754944-33754945	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs372211650	chr6:33754967-33754968	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs549349861	chr6:33754986-33754987	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs369220104	chr6:33755004-33755005	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs576979928	chr6:33755080-33755081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs199928367	chr6:33755117-33755118	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs200881176	chr6:33755118-33755119	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs398065692	chr6:33755119-33755120	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs141896454	chr6:33755145-33755146	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs182134859	chr6:33755189-33755190	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs375500423	chr6:33755217-33755218	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs111391236	chr6:33755220-33755221	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs150770707	chr6:33755319-33755320	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs543000881	chr6:33755441-33755442	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs561268919	chr6:33755531-33755532	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
44	rs139162048	chr6:33755540-33755541	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
45	rs756139	chr6:33755541-33755542	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs186920152	chr6:33755542-33755543	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
47	rs532578911	chr6:33755548-33755549	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
48	rs548019128	chr6:33755566-33755567	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
49	rs571126598	chr6:33755618-33755619	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs532495912	chr6:33755670-33755671	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:106)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Chronic lymphocytic leukemia	22228453	CNVD

Chromatin state (count:676 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33744200-33754400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:33746600-33755000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:33750400-33755000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33751600-33754400	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr6:33751600-33755200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:33751800-33754600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:33752000-33754400	Genic enhancers	Left Ventricle	heart
8	chr6:33752000-33754600	Genic enhancers	Adipose Nuclei	Adipose
9	chr6:33752000-33754600	Weak transcription	Fetal Brain Male	brain
10	chr6:33752000-33755000	Genic enhancers	Brain Cingulate Gyrus	brain
11	chr6:33752400-33754400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:33752400-33754400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:33752400-33754400	Genic enhancers	Pancreas	Pancrea
14	chr6:33752400-33754400	Genic enhancers	Rectal Smooth Muscle	rectum
15	chr6:33752400-33754600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:33752400-33754800	Genic enhancers	Stomach Smooth Muscle	stomach
17	chr6:33752600-33754400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:33752600-33754400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:33752600-33754400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:33752600-33754600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:33752600-33754600	Genic enhancers	Colon Smooth Muscle	Colon
22	chr6:33752600-33755000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:33752600-33755200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:33752600-33755600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:33752800-33754400	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr6:33752800-33754800	Genic enhancers	Osteobl	bone
27	chr6:33752800-33755200	Genic enhancers	Brain Hippocampus Middle	brain
28	chr6:33752800-33755400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:33752800-33755400	Genic enhancers	Fetal Muscle Leg	muscle
30	chr6:33752800-33755400	Genic enhancers	Placenta	Placenta
31	chr6:33753000-33754400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:33753000-33754400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:33753000-33754400	Genic enhancers	Lung	lung
34	chr6:33753000-33754400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:33753000-33754400	Genic enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:33753000-33754400	Genic enhancers	HMEC	breast
37	chr6:33753000-33754600	Genic enhancers	Primary T cells from cord blood	blood
38	chr6:33753000-33754600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:33753000-33754600	Genic enhancers	Liver	Liver
40	chr6:33753000-33754800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:33753000-33754800	Genic enhancers	Brain Substantia Nigra	brain
42	chr6:33753000-33754800	Genic enhancers	Fetal Lung	lung
43	chr6:33753000-33755200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:33753000-33755200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:33753000-33755200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:33753000-33755200	Genic enhancers	HSMM	muscle
47	chr6:33753000-33755400	Genic enhancers	Primary B cells from peripheral blood	blood
48	chr6:33753000-33756000	Flanking Active TSS	HUVEC	blood vessel
49	chr6:33753200-33754400	Genic enhancers	Primary hematopoietic stem cells	blood
50	chr6:33753200-33754600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links