Variant report

Variant	esv3438523
Chromosome Location	chr10:25295746-25300144
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25293686..25295867-chr10:25305420..25307144,2	MCF-7	breast:
2	chr10:25295102..25297454-chr10:25303766..25306352,3	K562	blood:
3	chr10:25294669..25297454-chr10:25303766..25306903,4	K562	blood:
4	chr10:25290895..25292994-chr10:25295667..25297503,2	K562	blood:
5	chr10:25295989..25298315-chr10:25301513..25303764,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	chromatin interactions
ENSG00000151023	chromatin interactions

Extended variants
information (count: 181 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:181 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546628940	chr10:25295748-25295749	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs192992668	chr10:25295764-25295765	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs11014343	chr10:25295791-25295792	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs547567090	chr10:25295812-25295813	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs111226953	chr10:25295836-25295837	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs558925793	chr10:25295848-25295849	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs561071315	chr10:25295869-25295870	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs79498580	chr10:25295871-25295872	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs537488992	chr10:25295922-25295923	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs79971023	chr10:25295968-25295969	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs573935715	chr10:25295980-25295981	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs542756903	chr10:25296057-25296058	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs145916728	chr10:25296073-25296074	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs113844360	chr10:25296075-25296076	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs138409540	chr10:25296086-25296087	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs375827130	chr10:25296147-25296148	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs372542841	chr10:25296152-25296153	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs184136548	chr10:25296170-25296171	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs189459730	chr10:25296186-25296187	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs369066833	chr10:25296195-25296196	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs181981587	chr10:25296197-25296198	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs544463460	chr10:25296232-25296233	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs563439876	chr10:25296255-25296256	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs537290968	chr10:25296296-25296297	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs569880425	chr10:25296324-25296325	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs201070755	chr10:25296345-25296346	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs532483229	chr10:25296354-25296355	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs543112774	chr10:25296359-25296360	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs529663941	chr10:25296375-25296376	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs10764517	chr10:25296379-25296380	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs566545756	chr10:25296395-25296396	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs184963298	chr10:25296414-25296415	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs552396867	chr10:25296425-25296426	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs11014344	chr10:25296433-25296434	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs538145213	chr10:25296462-25296463	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs371575499	chr10:25296512-25296513	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs567570306	chr10:25296531-25296532	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs189590832	chr10:25296566-25296567	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs147997761	chr10:25296568-25296569	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs181537004	chr10:25296584-25296585	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs113265117	chr10:25296585-25296586	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs113593878	chr10:25296590-25296591	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs186284792	chr10:25296655-25296656	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs544526892	chr10:25296685-25296686	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs561593118	chr10:25296700-25296701	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs190215296	chr10:25296735-25296736	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs552076979	chr10:25296766-25296767	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs540203636	chr10:25296834-25296835	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs568308252	chr10:25296890-25296891	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs560036997	chr10:25297005-25297006	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25295200-25300800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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