Variant report

Variant	rs10764517
Chromosome Location	chr10:25296379-25296380
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25290895..25292994-chr10:25295667..25297503,2	K562	blood:
2	chr10:25295989..25298315-chr10:25301513..25303764,2	K562	blood:
3	chr10:25294669..25297454-chr10:25303766..25306903,4	K562	blood:
4	chr10:25295102..25297454-chr10:25303766..25306352,3	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1000875	0.99[ASN][1000 genomes]
rs10508685	0.97[ASN][1000 genomes]
rs10508686	0.98[ASN][1000 genomes]
rs10764515	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10764516	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764518	0.99[ASN][1000 genomes]
rs10828740	0.99[ASN][1000 genomes]
rs10828741	0.99[ASN][1000 genomes]
rs10828743	0.86[ASN][1000 genomes]
rs10828744	0.99[ASN][1000 genomes]
rs10828745	0.98[ASN][1000 genomes]
rs10828747	0.83[ASN][1000 genomes]
rs11014347	0.99[ASN][1000 genomes]
rs11014348	0.99[ASN][1000 genomes]
rs11014349	0.99[ASN][1000 genomes]
rs11014350	0.97[ASN][1000 genomes]
rs11014351	0.96[ASN][1000 genomes]
rs11014357	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014360	0.98[ASN][1000 genomes]
rs11014361	0.88[ASN][1000 genomes]
rs11014362	0.83[ASN][1000 genomes]
rs1124017	0.98[ASN][1000 genomes]
rs11593926	0.99[ASN][1000 genomes]
rs11598879	0.99[ASN][1000 genomes]
rs12249889	0.99[ASN][1000 genomes]
rs12256642	0.99[ASN][1000 genomes]
rs12356765	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12761282	0.81[ASN][1000 genomes]
rs12769388	0.89[ASN][1000 genomes]
rs12776058	0.99[ASN][1000 genomes]
rs12784769	0.89[ASN][1000 genomes]
rs1352982	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1352984	0.97[ASN][1000 genomes]
rs1352985	0.98[ASN][1000 genomes]
rs1492608	0.99[ASN][1000 genomes]
rs1546097	0.99[ASN][1000 genomes]
rs1907791	0.84[ASN][1000 genomes]
rs2031600	0.81[ASN][1000 genomes]
rs2087782	0.99[ASN][1000 genomes]
rs2131276	0.99[ASN][1000 genomes]
rs2131277	0.99[ASN][1000 genomes]
rs2220707	0.84[ASN][1000 genomes]
rs2279547	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2291583	0.97[ASN][1000 genomes]
rs2291584	0.98[ASN][1000 genomes]
rs2291585	0.98[ASN][1000 genomes]
rs2291586	0.99[ASN][1000 genomes]
rs2307047	0.81[ASN][1000 genomes]
rs2367506	0.99[ASN][1000 genomes]
rs274290	0.80[ASN][1000 genomes]
rs4345864	0.94[ASN][1000 genomes]
rs4747509	0.99[ASN][1000 genomes]
rs4747510	0.99[ASN][1000 genomes]
rs4747511	0.98[ASN][1000 genomes]
rs4748993	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748994	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748996	0.99[ASN][1000 genomes]
rs4748997	0.99[ASN][1000 genomes]
rs4748998	0.99[ASN][1000 genomes]
rs4748999	0.98[ASN][1000 genomes]
rs4749000	0.84[ASN][1000 genomes]
rs4749001	0.83[ASN][1000 genomes]
rs56192563	0.97[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482468	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7082131	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086282	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7095364	0.99[ASN][1000 genomes]
rs7393543	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913853	0.99[ASN][1000 genomes]
rs902903	0.81[ASN][1000 genomes]
rs902904	0.99[ASN][1000 genomes]
rs902905	0.99[ASN][1000 genomes]
rs950609	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987274	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438523	chr10:25295746-25300144	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25295200-25300800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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