Variant report

Variant	rs2307047
Chromosome Location	chr10:25271270-25271271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25263858..25265839-chr10:25269718..25271619,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1000875	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs10508685	0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs10508686	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.81[ASN][1000 genomes]
rs10764515	0.85[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs10764516	0.81[ASN][1000 genomes]
rs10764517	0.81[ASN][1000 genomes]
rs10764518	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs10764519	0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap]
rs10828740	0.81[ASN][1000 genomes]
rs10828741	0.82[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10828744	0.81[ASN][1000 genomes]
rs10828745	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11014347	0.81[ASN][1000 genomes]
rs11014348	0.81[ASN][1000 genomes]
rs11014349	0.81[ASN][1000 genomes]
rs11014350	0.80[ASN][1000 genomes]
rs11014357	0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs11014360	0.81[ASN][1000 genomes]
rs11014365	0.93[GIH][hapmap];0.83[MEX][hapmap]
rs1124017	0.81[ASN][1000 genomes]
rs11593926	0.81[ASN][1000 genomes]
rs11598879	0.81[ASN][1000 genomes]
rs12247642	0.96[YRI][hapmap]
rs12249889	0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs12251969	0.92[YRI][hapmap]
rs12256642	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs12356765	0.81[ASN][1000 genomes]
rs12761282	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12776058	0.81[ASN][1000 genomes]
rs12781953	0.91[AFR][1000 genomes]
rs12784769	0.96[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1352985	0.81[ASN][1000 genomes]
rs1492608	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.81[ASN][1000 genomes]
rs1546097	0.84[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.81[ASN][1000 genomes]
rs166670	0.93[ASN][1000 genomes]
rs16925207	0.94[ASN][1000 genomes]
rs2031600	0.82[ASN][1000 genomes]
rs2087782	0.81[ASN][1000 genomes]
rs2131276	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2131277	0.81[ASN][1000 genomes]
rs2279547	0.85[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs2291583	0.91[CHD][hapmap];1.00[GIH][hapmap]
rs2291584	0.81[ASN][1000 genomes]
rs2291585	0.81[ASN][1000 genomes]
rs2291586	0.81[ASN][1000 genomes]
rs2367506	0.81[ASN][1000 genomes]
rs274290	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs274291	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274292	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274293	0.93[ASN][1000 genomes]
rs274294	0.93[ASN][1000 genomes]
rs274301	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs274311	0.86[CHD][hapmap]
rs4345864	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs4747509	0.81[ASN][1000 genomes]
rs4747510	0.81[ASN][1000 genomes]
rs4747511	0.81[ASN][1000 genomes]
rs4748996	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs4748997	0.81[ASN][1000 genomes]
rs4748998	0.81[ASN][1000 genomes]
rs4748999	0.81[ASN][1000 genomes]
rs4749000	0.88[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap]
rs56192563	0.80[ASN][1000 genomes]
rs6482467	0.82[CHB][hapmap]
rs7082131	0.82[ASN][1000 genomes]
rs7086282	0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs7095364	0.81[ASN][1000 genomes]
rs7393543	0.82[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs7913853	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs902903	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902904	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs902905	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs902906	0.93[GIH][hapmap];0.80[LWK][hapmap]
rs950609	0.81[ASN][1000 genomes]
rs987274	0.82[CHB][hapmap];0.81[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2307047	THNSL1	cis	cerebellum	SCAN
rs2307047	THNSL1	cis	parietal	SCAN
rs2307047	PIP4K2A	cis	parietal	SCAN
rs2307047	ENKUR	cis	parietal	SCAN
rs2307047	ANKRD9	trans	cerebellum	SCAN
rs2307047	C10orf113	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25263400-25272000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25264400-25271600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25264400-25277600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:25264400-25277800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:25264400-25281800	Weak transcription	Fetal Intestine Small	intestine
6	chr10:25264600-25292200	Weak transcription	Ovary	ovary
7	chr10:25265000-25272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:25269200-25277800	Weak transcription	Brain Angular Gyrus	brain
9	chr10:25269600-25275400	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:25269600-25276600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:25270800-25272400	Weak transcription	Osteobl	bone
12	chr10:25271000-25271800	Enhancers	Primary T cells from cord blood	blood
13	chr10:25271000-25271800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:25271000-25271800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:25271000-25271800	Enhancers	GM12878-XiMat	blood
16	chr10:25271200-25271600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:25271200-25277800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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