Variant report

Variant	rs1124017
Chromosome Location	chr10:25326104-25326105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1000875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10508685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10508686	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764515	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764516	0.97[ASN][1000 genomes]
rs10764517	0.98[ASN][1000 genomes]
rs10764518	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10764519	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs10828740	0.99[ASN][1000 genomes]
rs10828741	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10828743	0.87[ASN][1000 genomes]
rs10828744	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828747	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014347	0.99[ASN][1000 genomes]
rs11014348	0.99[ASN][1000 genomes]
rs11014349	0.99[ASN][1000 genomes]
rs11014350	0.98[ASN][1000 genomes]
rs11014351	0.97[ASN][1000 genomes]
rs11014357	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11014360	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014361	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11014362	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014365	0.84[CEU][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs11014379	0.80[EUR][1000 genomes]
rs11593926	0.99[ASN][1000 genomes]
rs11598879	0.99[ASN][1000 genomes]
rs12219239	0.82[JPT][hapmap]
rs12241661	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12249889	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.99[ASN][1000 genomes]
rs12256642	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.99[ASN][1000 genomes]
rs12356765	0.99[ASN][1000 genomes]
rs12761282	0.80[ASN][1000 genomes]
rs12764623	0.81[EUR][1000 genomes]
rs12769388	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12773782	0.80[EUR][1000 genomes]
rs12776058	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12784769	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1352982	0.86[ASN][1000 genomes]
rs1352984	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1352985	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492607	0.81[EUR][1000 genomes]
rs1492608	1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs1546097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552770	0.81[EUR][1000 genomes]
rs1552771	0.81[EUR][1000 genomes]
rs1907791	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2087782	0.99[ASN][1000 genomes]
rs2131275	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2131276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2131277	0.99[ASN][1000 genomes]
rs2220707	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279547	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2291583	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2291584	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291585	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2291586	0.99[ASN][1000 genomes]
rs2307047	0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.81[ASN][1000 genomes]
rs2367506	0.99[ASN][1000 genomes]
rs274301	0.95[CHB][hapmap]
rs274305	0.81[CHB][hapmap]
rs274311	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs274313	0.82[CHB][hapmap]
rs4237369	0.83[EUR][1000 genomes]
rs4345864	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4508094	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs4747509	0.99[ASN][1000 genomes]
rs4747510	0.99[ASN][1000 genomes]
rs4747511	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748993	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4748994	0.89[ASN][1000 genomes]
rs4748996	0.92[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748997	0.99[ASN][1000 genomes]
rs4748998	0.99[ASN][1000 genomes]
rs4748999	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749000	0.92[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749001	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4749004	0.80[EUR][1000 genomes]
rs4749005	0.80[EUR][1000 genomes]
rs56192563	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60251099	0.84[ASN][1000 genomes]
rs6482467	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs6482468	0.80[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7082131	0.97[ASN][1000 genomes]
rs7086282	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7095364	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7393543	1.00[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7896122	0.82[EUR][1000 genomes]
rs7911863	0.83[EUR][1000 genomes]
rs7913853	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs902903	0.88[CEU][hapmap];0.81[ASN][1000 genomes]
rs902904	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.99[ASN][1000 genomes]
rs902905	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs902906	0.84[CEU][hapmap];0.95[GIH][hapmap];0.81[EUR][1000 genomes]
rs923758	0.81[EUR][1000 genomes]
rs950609	0.98[ASN][1000 genomes]
rs987274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1124017	THNSL1	cis	parietal	SCAN
rs1124017	PIP4K2A	cis	parietal	SCAN
rs1124017	OTUD1	cis	parietal	SCAN
rs1124017	THNSL1	cis	cerebellum	SCAN
rs1124017	ENKUR	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25324800-25327000	Enhancers	HepG2	liver
2	chr10:25325400-25326200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:25325400-25326800	Enhancers	Brain Substantia Nigra	brain
4	chr10:25325600-25326800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:25325800-25326200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:25325800-25327000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:25326000-25327200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links