Variant report

Variant	rs1907791
Chromosome Location	chr10:25334832-25334833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25305526..25307030-chr10:25332237..25335225,2	MCF-7	breast:
2	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1000875	0.86[ASN][1000 genomes]
rs10508685	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10508686	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764516	0.85[ASN][1000 genomes]
rs10764517	0.84[ASN][1000 genomes]
rs10764518	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828740	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828741	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828743	0.81[EUR][1000 genomes]
rs10828744	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828745	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828747	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828750	0.81[ASN][1000 genomes]
rs10828751	0.81[ASN][1000 genomes]
rs10828755	0.85[EUR][1000 genomes]
rs11014347	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014348	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014349	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014350	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014351	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014357	0.85[ASN][1000 genomes]
rs11014360	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014361	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014365	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014368	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014375	0.85[EUR][1000 genomes]
rs11014379	0.87[EUR][1000 genomes]
rs1124017	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593926	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11598879	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12241661	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12243641	0.82[ASN][1000 genomes]
rs12249889	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12256642	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12356765	0.85[ASN][1000 genomes]
rs12764623	0.88[EUR][1000 genomes]
rs12773782	0.87[EUR][1000 genomes]
rs12776058	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1352982	0.99[ASN][1000 genomes]
rs1352984	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1352985	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1492607	0.88[EUR][1000 genomes]
rs1492608	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1546097	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1552770	0.88[EUR][1000 genomes]
rs1552771	0.88[EUR][1000 genomes]
rs1963584	0.88[ASN][1000 genomes]
rs2087782	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2131275	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2131276	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2131277	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220707	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291583	0.84[ASN][1000 genomes]
rs2291584	0.85[ASN][1000 genomes]
rs2291585	0.85[ASN][1000 genomes]
rs2291586	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2367506	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2367507	0.88[ASN][1000 genomes]
rs4237369	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4345864	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4508094	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4747509	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747510	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747511	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748996	0.86[ASN][1000 genomes]
rs4748997	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748998	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748999	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4749000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749001	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749004	0.87[EUR][1000 genomes]
rs4749005	0.87[EUR][1000 genomes]
rs56192563	0.84[ASN][1000 genomes]
rs6482467	0.82[ASN][1000 genomes]
rs6482468	0.99[ASN][1000 genomes]
rs7082131	0.84[ASN][1000 genomes]
rs7086282	0.85[ASN][1000 genomes]
rs7095364	0.86[ASN][1000 genomes]
rs7393543	0.85[ASN][1000 genomes]
rs7896122	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898431	0.82[ASN][1000 genomes]
rs7911863	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7913853	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs902904	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs902905	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs902906	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs923758	0.88[EUR][1000 genomes]
rs950609	0.84[ASN][1000 genomes]
rs987274	0.85[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25326600-25336200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links