Variant report

Variant	rs10828750
Chromosome Location	chr10:25348695-25348696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:
2	chr10:25306319..25307953-chr10:25346499..25349389,2	MCF-7	breast:
3	chr10:25239858..25243208-chr10:25347592..25352504,4	K562	blood:
4	chr10:25343371..25346299-chr10:25346762..25349074,2	K562	blood:

Variant related genes	Relation type
ENSG00000099256	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10828747	0.82[ASN][1000 genomes]
rs10828751	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828752	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828754	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828755	0.85[ASN][1000 genomes]
rs11014362	0.82[ASN][1000 genomes]
rs11014365	0.91[ASN][1000 genomes]
rs11014367	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11014368	0.98[ASN][1000 genomes]
rs11014375	0.92[ASN][1000 genomes]
rs11014379	0.86[ASN][1000 genomes]
rs11014389	0.81[ASN][1000 genomes]
rs12241661	0.91[ASN][1000 genomes]
rs12243641	0.84[ASN][1000 genomes]
rs12764623	0.90[ASN][1000 genomes]
rs12773782	0.86[ASN][1000 genomes]
rs1352982	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1492606	0.80[ASN][1000 genomes]
rs1492607	0.85[ASN][1000 genomes]
rs1552770	0.86[ASN][1000 genomes]
rs1552771	0.90[ASN][1000 genomes]
rs1907790	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1907791	0.81[ASN][1000 genomes]
rs1963584	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2131275	0.91[ASN][1000 genomes]
rs2220707	0.81[ASN][1000 genomes]
rs2367507	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4237369	0.91[ASN][1000 genomes]
rs4508094	0.99[ASN][1000 genomes]
rs4749000	0.81[ASN][1000 genomes]
rs4749001	0.82[ASN][1000 genomes]
rs4749004	0.86[ASN][1000 genomes]
rs4749005	0.85[ASN][1000 genomes]
rs6482468	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7896122	0.91[ASN][1000 genomes]
rs7898431	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911863	0.91[ASN][1000 genomes]
rs902906	0.97[ASN][1000 genomes]
rs923757	0.91[ASN][1000 genomes]
rs923758	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25345200-25349400	Enhancers	Fetal Intestine Small	intestine
2	chr10:25345600-25350600	Enhancers	Fetal Intestine Large	intestine
3	chr10:25346000-25349200	Enhancers	K562	blood
4	chr10:25347200-25350600	Weak transcription	Liver	Liver
5	chr10:25347200-25350600	Weak transcription	Gastric	stomach
6	chr10:25347200-25350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:25347600-25348800	Enhancers	Hela-S3	cervix
8	chr10:25348200-25350600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:25348200-25351200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:25348200-25351600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:25348200-25352200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:25348400-25348800	Enhancers	NHEK	skin
13	chr10:25348400-25349000	Enhancers	Lung	lung
14	chr10:25348400-25349000	Enhancers	Small Intestine	intestine
15	chr10:25348400-25349600	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:25348400-25349600	Flanking Active TSS	A549	lung
17	chr10:25348400-25349800	Enhancers	Placenta	Placenta
18	chr10:25348400-25350800	Enhancers	HepG2	liver
19	chr10:25348400-25351000	Enhancers	HMEC	breast
20	chr10:25348400-25351200	Enhancers	HUVEC	blood vessel
21	chr10:25348400-25351600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:25348400-25352200	Enhancers	Stomach Mucosa	stomach
23	chr10:25348400-25352800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:25348600-25348800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:25348600-25348800	Enhancers	Aorta	Aorta
26	chr10:25348600-25348800	Enhancers	Colonic Mucosa	Colon
27	chr10:25348600-25349200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:25348600-25349600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:25348600-25350000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:25348600-25350800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:25348600-25351000	Enhancers	Osteobl	bone

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